Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter xixiisoli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1550273 bp
Thymine Count
1549681 bp
Guanine Count
942263 bp
Cytosine Count
932424 bp
Genome Length
4974702 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
48 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nudix domain-containing protein | SAMN06297358_2589 | Not Available | Negative | 3015457 - 3016194 | 28835.5 |
| major facilitator superfamily protein | SAMN06297358_2590 | Not Available | Positive | 3016377 - 3017078 | 25171.2 |
| hypothetical protein | SAMN06297358_2591 | Not Available | Positive | 3017093 - 3017326 | 8692.79 |
| hypothetical protein | SAMN06297358_2592 | Not Available | Positive | 3017416 - 3017721 | 11029.9 |
| uncharacterized lipoprotein yddw, upf0748 family | SAMN06297358_2593 | Not Available | Positive | 3017921 - 3019411 | 56606.3 |
| rep element-mobilizing transposase rayt | SAMN06297358_2594 | Not Available | Negative | 3019672 - 3020217 | 21176.5 |
| hypothetical protein | SAMN06297358_2595 | Not Available | Negative | 3020408 - 3020953 | 20747.0 |
| zn-dependent amino- or carboxypeptidase, m28 family | SAMN06297358_2596 | Not Available | Negative | 3021051 - 3022670 | 58550.3 |
| ribose 5-phosphate isomerase b | SAMN06297358_2597 | Not Available | Negative | 3022738 - 3023175 | 15653.5 |
| sec-independent protein translocase protein tatc | SAMN06297358_2598 | Not Available | Negative | 3023286 - 3024167 | 33076.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

