Pedobacter xixiisoli

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Pedobacter

Description

Pedobacter xixiisoli is a bacterial species characterized by the presence of flagella, which suggests it has the capability for motility. This feature is significant for its ecological interactions, potentially aiding in nutrient acquisition and colonization within its environment. The genome of Pedobacter xixiisoli is comprised of a single replicon, indicating a streamlined genetic structure that may contribute to its adaptability in various habitats. The specific accession number for its genomic information is OCMT00000000.1, which allows for further exploration and study of its genetic characteristics and functions. Understanding the motility of Pedobacter xixiisoli through its flagella can provide insights into its ecological role, particularly in soil ecosystems where it may interact with other microorganisms and contribute to nutrient cycling. The presence of a single replicon may suggest a level of genetic efficiency that could be advantageous in fluctuating environmental conditions. Overall, the traits of Pedobacter xixiisoli indicate that it is well-suited for its ecological niche, leveraging motility and streamlined genetics to thrive in its surroundings.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusPedobacter
SpeciesPedobacter xixiisoli
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedobacter xixiisoli strain CGMCC 1.12803 genome assembly, contig:

Gene Summary

Adenine Count

1550273 bp

Thymine Count

1549681 bp

Guanine Count

942263 bp

Cytosine Count

932424 bp

Genome Length

4974702 bp

Protein-coding Genes

4166 genes

Non-Coding Genes

48 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
nudix domain-containing proteinSAMN06297358_2589Not AvailableNegative3015457 - 301619428835.5
major facilitator superfamily proteinSAMN06297358_2590Not AvailablePositive3016377 - 301707825171.2
hypothetical proteinSAMN06297358_2591Not AvailablePositive3017093 - 30173268692.79
hypothetical proteinSAMN06297358_2592Not AvailablePositive3017416 - 301772111029.9
uncharacterized lipoprotein yddw, upf0748 familySAMN06297358_2593Not AvailablePositive3017921 - 301941156606.3
rep element-mobilizing transposase raytSAMN06297358_2594Not AvailableNegative3019672 - 302021721176.5
hypothetical proteinSAMN06297358_2595Not AvailableNegative3020408 - 302095320747.0
zn-dependent amino- or carboxypeptidase, m28 familySAMN06297358_2596Not AvailableNegative3021051 - 302267058550.3
ribose 5-phosphate isomerase bSAMN06297358_2597Not AvailableNegative3022738 - 302317515653.5
sec-independent protein translocase protein tatcSAMN06297358_2598Not AvailableNegative3023286 - 302416733076.5

Displaying genes 2531 – 2540 of 4214 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.