Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter xixiisoli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1550273 bp
Thymine Count
1549681 bp
Guanine Count
942263 bp
Cytosine Count
932424 bp
Genome Length
4974702 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
48 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rna polymerase, sigma-24 subunit, rpoe | SAMN06297358_2579 | Not Available | Negative | 3003298 - 3003834 | 20964.2 |
| hypothetical protein | SAMN06297358_2580 | Not Available | Positive | 3004007 - 3004321 | 11823.3 |
| chaperone of endosialidase | SAMN06297358_2581 | Not Available | Positive | 3004379 - 3004795 | 15043.3 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN06297358_2582 | Not Available | Positive | 3005034 - 3005585 | 21813.2 |
| hypothetical protein | SAMN06297358_2583 | Not Available | Positive | 3005668 - 3006321 | 24246.1 |
| protein of unknown function | SAMN06297358_2584 | Not Available | Positive | 3006347 - 3007558 | 45683.0 |
| outer membrane receptor proteins, mostly fe transport | SAMN06297358_2585 | Not Available | Positive | 3007639 - 3010032 | 89633.5 |
| hypothetical protein | SAMN06297358_2586 | Not Available | Positive | 3010044 - 3011240 | 43733.4 |
| uncharacterized iron-regulated membrane protein | SAMN06297358_2587 | Not Available | Positive | 3011252 - 3012382 | 43310.8 |
| carboxypeptidase regulatory-like domain-containing protein | SAMN06297358_2588 | Not Available | Positive | 3012408 - 3014864 | 92071.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

