Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter xixiisoli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1550273 bp
Thymine Count
1549681 bp
Guanine Count
942263 bp
Cytosine Count
932424 bp
Genome Length
4974702 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
48 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| protein of unknown function | SAMN06297358_2518 | Not Available | Negative | 2930785 - 2931525 | 26263.8 |
| ca-activated chloride channel family protein | SAMN06297358_2519 | Not Available | Negative | 2931556 - 2933475 | 69779.5 |
| protein of unknown function | SAMN06297358_2520 | Not Available | Negative | 2933537 - 2934430 | 34140.0 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN06297358_2521 | Not Available | Positive | 2934575 - 2935183 | 23765.6 |
| tonb protein c-terminal | SAMN06297358_2522 | Not Available | Positive | 2935161 - 2936453 | 47123.9 |
| negative transcriptional regulator, paib family | SAMN06297358_2523 | Not Available | Positive | 2936458 - 2937072 | 22882.0 |
| l-serine dehydratase | SAMN06297358_2524 | Not Available | Negative | 2937220 - 2938647 | 50917.0 |
| uncharacterized membrane protein yckc, rdd family | SAMN06297358_2525 | Not Available | Positive | 2938750 - 2939289 | 20429.8 |
| putative mg2+ transporter-c (mgtc) family protein | SAMN06297358_2526 | Not Available | Negative | 2939270 - 2939929 | 24331.9 |
| chaperonin groel | SAMN06297358_2527 | Not Available | Negative | 2940419 - 2942056 | 57597.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

