Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter xixiisoli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1550273 bp
Thymine Count
1549681 bp
Guanine Count
942263 bp
Cytosine Count
932424 bp
Genome Length
4974702 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
48 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative porin | SAMN06297358_2488 | Not Available | Negative | 2890972 - 2892981 | 76598.7 |
| purine-nucleoside phosphorylase | SAMN06297358_2489 | Not Available | Negative | 2892981 - 2893796 | 29914.5 |
| lipid-a-disaccharide kinase | SAMN06297358_2490 | Not Available | Negative | 2893759 - 2894820 | 40481.3 |
| lathosterol oxidase | SAMN06297358_2491 | Not Available | Positive | 2894987 - 2896126 | 44102.0 |
| multidrug efflux pump subunit acrb | SAMN06297358_2492 | Not Available | Negative | 2896756 - 2899812 | 111230.0 |
| rnd family efflux transporter, mfp subunit | SAMN06297358_2493 | Not Available | Negative | 2900171 - 2901220 | 37433.9 |
| outer membrane protein tolc | SAMN06297358_2494 | Not Available | Negative | 2901226 - 2902605 | 51357.6 |
| transcriptional regulator, tetr family | SAMN06297358_2495 | Not Available | Negative | 2902607 - 2903242 | 24421.6 |
| delta-1-pyrroline-5-carboxylate dehydrogenase | SAMN06297358_2496 | Not Available | Positive | 2903483 - 2905117 | 60138.8 |
| aromatic amino acid transport protein arop | SAMN06297358_2497 | Not Available | Positive | 2905258 - 2906667 | 52028.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

