Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter xixiisoli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1550273 bp
Thymine Count
1549681 bp
Guanine Count
942263 bp
Cytosine Count
932424 bp
Genome Length
4974702 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
48 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 23s rrna (pseudouridine1915-n3)-methyltransferase | SAMN06297358_2478 | Not Available | Positive | 2883267 - 2883740 | 18305.3 |
| hypothetical protein | SAMN06297358_2479 | Not Available | Positive | 2883865 - 2884005 | 5800.27 |
| hypothetical protein | SAMN06297358_2480 | Not Available | Negative | 2884063 - 2884599 | 19243.3 |
| peptidyl-prolyl cis-trans isomerase b (cyclophilin b) | SAMN06297358_2481 | Not Available | Negative | 2884678 - 2885136 | 16536.6 |
| hypothetical protein | SAMN06297358_2482 | Not Available | Positive | 2885457 - 2886722 | 47758.8 |
| atpase components of abc transporters with duplicated atpase domains | SAMN06297358_2483 | Not Available | Positive | 2886957 - 2888546 | 59906.0 |
| outer membrane protein beta-barrel domain-containing protein | SAMN06297358_2484 | Not Available | Positive | 2888760 - 2889446 | 23705.9 |
| protein of unknown function | SAMN06297358_2485 | Not Available | Positive | 2889543 - 2889893 | 13122.9 |
| hypothetical protein | SAMN06297358_2486 | Not Available | Positive | 2889900 - 2890301 | 14379.4 |
| hypothetical protein | SAMN06297358_2487 | Not Available | Positive | 2890359 - 2890772 | 15273.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

