Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter xixiisoli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1550273 bp
Thymine Count
1549681 bp
Guanine Count
942263 bp
Cytosine Count
932424 bp
Genome Length
4974702 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
48 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 4-hydroxyphenylpyruvate dioxygenase | SAMN06297358_2193 | Not Available | Positive | 2551386 - 2552516 | 42524.4 |
| hypothetical protein | SAMN06297358_2194 | Not Available | Negative | 2552634 - 2552750 | 4241.29 |
| membrane protein | SAMN06297358_2195 | Not Available | Positive | 2552899 - 2553819 | 35071.9 |
| outer membrane protein beta-barrel domain-containing protein | SAMN06297358_2196 | Not Available | Negative | 2553826 - 2554410 | 20740.9 |
| hypothetical protein | SAMN06297358_2197 | Not Available | Negative | 2554527 - 2554802 | 10187.4 |
| malate dehydrogenase (nad) | SAMN06297358_2198 | Not Available | Positive | 2555274 - 2556212 | 33038.3 |
| aspartyl protease | SAMN06297358_2199 | Not Available | Positive | 2556307 - 2556732 | 15549.0 |
| antitoxin yefm | SAMN06297358_2200 | Not Available | Positive | 2556780 - 2557034 | 9588.57 |
| toxin yoeb | SAMN06297358_2201 | Not Available | Positive | 2557035 - 2557292 | 10567.5 |
| n-acetylmuramoyl-l-alanine amidase | SAMN06297358_2202 | Not Available | Positive | 2557308 - 2557970 | 25197.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

