Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter xixiisoli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1550273 bp
Thymine Count
1549681 bp
Guanine Count
942263 bp
Cytosine Count
932424 bp
Genome Length
4974702 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
48 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| helix-turn-helix domain-containing protein | SAMN06297358_2099 | Not Available | Negative | 2447989 - 2448258 | 10348.7 |
| camp-binding domain of crp or a regulatory subunit of camp-dependent protein kinases | SAMN06297358_2100 | Not Available | Positive | 2448333 - 2448914 | 22925.6 |
| hypothetical protein | SAMN06297358_2101 | Not Available | Positive | 2448994 - 2449242 | 9794.08 |
| hypothetical protein | SAMN06297358_2102 | Not Available | Positive | 2449480 - 2449824 | 12731.0 |
| susd family protein | SAMN06297358_2103 | Not Available | Negative | 2449862 - 2451190 | 49491.9 |
| tonb-linked outer membrane protein, susc/raga family | SAMN06297358_2104 | Not Available | Negative | 2451223 - 2454390 | 117259.0 |
| thiol-disulfide isomerase or thioredoxin | SAMN06297358_2105 | Not Available | Negative | 2454401 - 2454937 | 20397.5 |
| hypothetical protein | SAMN06297358_2106 | Not Available | Negative | 2455331 - 2455570 | 8549.33 |
| hypothetical protein | SAMN06297358_2107 | Not Available | Positive | 2456498 - 2457052 | 21262.7 |
| hypothetical protein | SAMN06297358_2108 | Not Available | Positive | 2457069 - 2457902 | 33407.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

