Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter xixiisoli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1550273 bp
Thymine Count
1549681 bp
Guanine Count
942263 bp
Cytosine Count
932424 bp
Genome Length
4974702 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
48 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phytanoyl-coa dioxygenase (phyh) | SAMN06297358_2016 | Not Available | Negative | 2358559 - 2359305 | 28450.0 |
| protein of unknown function | SAMN06297358_2017 | Not Available | Negative | 2359331 - 2359873 | 20483.7 |
| dihydropteroate synthase | SAMN06297358_2018 | Not Available | Positive | 2359934 - 2360788 | 31676.3 |
| tigr00159 family protein | SAMN06297358_2020 | Not Available | Positive | 2361341 - 2362132 | 29818.8 |
| hypothetical protein | SAMN06297358_2021 | Not Available | Positive | 2362360 - 2364858 | 92755.2 |
| hypothetical protein | SAMN06297358_2022 | Not Available | Positive | 2365099 - 2365434 | 12801.3 |
| abc transporter transmembrane region | SAMN06297358_2023 | Not Available | Positive | 2365498 - 2366502 | 37500.8 |
| multidrug resistance efflux pump | SAMN06297358_2024 | Not Available | Positive | 2366495 - 2367856 | 51122.4 |
| outer membrane protein tolc | SAMN06297358_2025 | Not Available | Positive | 2367862 - 2369277 | 53979.2 |
| selenocysteine lyase/cysteine desulfurase | SAMN06297358_2027 | Not Available | Positive | 2369885 - 2371078 | 44915.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

