Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter xixiisoli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1550273 bp
Thymine Count
1549681 bp
Guanine Count
942263 bp
Cytosine Count
932424 bp
Genome Length
4974702 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
48 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN06297358_1993 | Not Available | Positive | 2336133 - 2336591 | 17953.9 |
| acetylornithine/succinyldiaminopimelate/ putresci ne aminotransferase | SAMN06297358_1994 | Not Available | Positive | 2336676 - 2337893 | 44008.1 |
| hypothetical protein | SAMN06297358_1995 | Not Available | Positive | 2337998 - 2338279 | 10488.8 |
| protein of unknown function duf58 | SAMN06297358_1996 | Not Available | Negative | 2338450 - 2339370 | 35368.3 |
| thioredoxin | SAMN06297358_1999 | Not Available | Negative | 2339780 - 2340097 | 11534.0 |
| dna polymerase iii, alpha subunit | SAMN06297358_2000 | Not Available | Negative | 2340255 - 2344685 | 166739.0 |
| pas/pac sensor signal transduction histidine kinase | SAMN06297358_2001 | Not Available | Positive | 2344868 - 2346631 | 67022.8 |
| hypothetical protein | SAMN06297358_2002 | Not Available | Negative | 2346748 - 2347047 | 11465.7 |
| tetratricopeptide repeat-containing protein | SAMN06297358_2003 | Not Available | Positive | 2347163 - 2348296 | 43279.6 |
| protein of unknown function | SAMN06297358_2004 | Not Available | Negative | 2348419 - 2348880 | 18209.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

