Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter xixiisoli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1550273 bp
Thymine Count
1549681 bp
Guanine Count
942263 bp
Cytosine Count
932424 bp
Genome Length
4974702 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
48 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| peptidase family m23 | SAMN06297358_1983 | Not Available | Positive | 2324752 - 2326479 | 64268.0 |
| peroxiredoxin q/bcp | SAMN06297358_1984 | Not Available | Positive | 2326559 - 2327020 | 16998.2 |
| wd40-like beta propeller repeat | SAMN06297358_1985 | Not Available | Negative | 2327145 - 2329118 | 73399.1 |
| type ix secretion system membrane protein, porp/sprf family | SAMN06297358_1986 | Not Available | Negative | 2329131 - 2330108 | 36222.4 |
| gliding motility-associated c-terminal domain-containing protein | SAMN06297358_1987 | Not Available | Negative | 2330113 - 2331303 | 44106.4 |
| collagen triple helix repeat-containing protein | SAMN06297358_1988 | Not Available | Negative | 2331303 - 2332613 | 43620.2 |
| transketolase | SAMN06297358_1989 | Not Available | Positive | 2332840 - 2333685 | 30774.4 |
| transketolase | SAMN06297358_1990 | Not Available | Positive | 2333836 - 2334792 | 34672.9 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN06297358_1991 | Not Available | Positive | 2334891 - 2335442 | 21590.7 |
| hypothetical protein | SAMN06297358_1992 | Not Available | Positive | 2335482 - 2336096 | 23671.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

