Pedobacter xixiisoli

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Pedobacter

Description

Pedobacter xixiisoli is a bacterial species characterized by the presence of flagella, which suggests it has the capability for motility. This feature is significant for its ecological interactions, potentially aiding in nutrient acquisition and colonization within its environment. The genome of Pedobacter xixiisoli is comprised of a single replicon, indicating a streamlined genetic structure that may contribute to its adaptability in various habitats. The specific accession number for its genomic information is OCMT00000000.1, which allows for further exploration and study of its genetic characteristics and functions. Understanding the motility of Pedobacter xixiisoli through its flagella can provide insights into its ecological role, particularly in soil ecosystems where it may interact with other microorganisms and contribute to nutrient cycling. The presence of a single replicon may suggest a level of genetic efficiency that could be advantageous in fluctuating environmental conditions. Overall, the traits of Pedobacter xixiisoli indicate that it is well-suited for its ecological niche, leveraging motility and streamlined genetics to thrive in its surroundings.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusPedobacter
SpeciesPedobacter xixiisoli
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedobacter xixiisoli strain CGMCC 1.12803 genome assembly, contig:

Gene Summary

Adenine Count

1550273 bp

Thymine Count

1549681 bp

Guanine Count

942263 bp

Cytosine Count

932424 bp

Genome Length

4974702 bp

Protein-coding Genes

4166 genes

Non-Coding Genes

48 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
heme exporter protein bSAMN06297358_1922Not AvailablePositive2263300 - 226396224609.3
heme exporter protein cSAMN06297358_1923Not AvailablePositive2264065 - 226472125119.0
hypothetical proteinSAMN06297358_1924Not AvailablePositive2264727 - 22649458374.83
glutamate dehydrogenase (nad(p)+)SAMN06297358_1925Not AvailablePositive2265085 - 226650651479.6
cytochrome c-type biogenesis protein ccmeSAMN06297358_1926Not AvailablePositive2266662 - 226711717101.4
cytochrome c-type biogenesis protein ccmfSAMN06297358_1927Not AvailablePositive2267117 - 226958592891.5
predicted oxidoreductase, contains short-chain dehydrogenase (sdr) and duf2520 domainsSAMN06297358_1928Not AvailablePositive2269585 - 227034327844.4
ferredoxin, 2fe-2sSAMN06297358_1929Not AvailablePositive2270389 - 227072112078.5
fes assembly protein iscxSAMN06297358_1930Not AvailablePositive2270810 - 22710529699.24
3-deoxy-d-manno-octulosonate 8-phosphate phosphatase (kdo 8-p phosphatase)SAMN06297358_1931Not AvailablePositive2271124 - 227164818785.6

Displaying genes 1881 – 1890 of 4214 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
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Health Effects

No health effects information available for this bacterium.