Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter xixiisoli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1550273 bp
Thymine Count
1549681 bp
Guanine Count
942263 bp
Cytosine Count
932424 bp
Genome Length
4974702 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
48 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| peptide/nickel transport system atp-binding protein | SAMN06297358_1848 | Not Available | Positive | 2176128 - 2177834 | 64339.3 |
| hypothetical protein | SAMN06297358_1849 | Not Available | Positive | 2178011 - 2179222 | 42725.0 |
| ribonuclease r | SAMN06297358_1850 | Not Available | Positive | 2179390 - 2181525 | 80842.5 |
| carboxypepd_reg-like domain-containing protein | SAMN06297358_1851 | Not Available | Positive | 2181667 - 2182845 | 44717.9 |
| geranylgeranyl diphosphate synthase, type ii | SAMN06297358_1852 | Not Available | Positive | 2182849 - 2183811 | 36029.5 |
| large subunit ribosomal protein l27 | SAMN06297358_1853 | Not Available | Negative | 2184016 - 2184438 | 14590.6 |
| lsu ribosomal protein l21p | SAMN06297358_1854 | Not Available | Negative | 2184497 - 2184808 | 11373.0 |
| glpgli family protein | SAMN06297358_1856 | Not Available | Positive | 2185368 - 2186315 | 34942.7 |
| outer membrane receptor proteins, mostly fe transport | SAMN06297358_1857 | Not Available | Positive | 2186404 - 2189031 | 97545.4 |
| nudix-type nucleoside diphosphatase, yffh/adpp family | SAMN06297358_1858 | Not Available | Positive | 2189341 - 2189919 | 21946.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

