Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter xixiisoli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1550273 bp
Thymine Count
1549681 bp
Guanine Count
942263 bp
Cytosine Count
932424 bp
Genome Length
4974702 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
48 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trna dimethylallyltransferase | SAMN06297358_1836 | Not Available | Positive | 2165664 - 2166578 | 34677.6 |
| probable oxidoreductase, llm family | SAMN06297358_1837 | Not Available | Positive | 2166686 - 2167717 | 38196.8 |
| uncharacterized membrane protein ygdd, tmem256/duf423 family | SAMN06297358_1838 | Not Available | Positive | 2167750 - 2168151 | 14818.5 |
| arginine deiminase | SAMN06297358_1840 | Not Available | Positive | 2168402 - 2169856 | 54885.7 |
| hypothetical protein | SAMN06297358_1841 | Not Available | Positive | 2169935 - 2170846 | 34078.7 |
| d-methionine transport system substrate-binding protein | SAMN06297358_1842 | Not Available | Negative | 2170902 - 2171708 | 29572.6 |
| d-methionine transport system permease protein | SAMN06297358_1843 | Not Available | Negative | 2171719 - 2172375 | 23302.6 |
| d-methionine transport system atp-binding protein | SAMN06297358_1844 | Not Available | Negative | 2172368 - 2173105 | 26822.9 |
| arginine decarboxylase | SAMN06297358_1846 | Not Available | Positive | 2173652 - 2175043 | 54131.6 |
| hypothetical protein | SAMN06297358_1847 | Not Available | Positive | 2175415 - 2176128 | 27808.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

