Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter xixiisoli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1550273 bp
Thymine Count
1549681 bp
Guanine Count
942263 bp
Cytosine Count
932424 bp
Genome Length
4974702 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
48 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| predicted dna-binding protein, mmcq/yjbr family | SAMN06297358_1814 | Not Available | Negative | 2144659 - 2144997 | 13165.0 |
| trna u34 5-methylaminomethyl-2-thiouridine-forming methyltransferase mnmc | SAMN06297358_1817 | Not Available | Positive | 2145439 - 2146110 | 24910.4 |
| thiol-disulfide isomerase or thioredoxin | SAMN06297358_1818 | Not Available | Negative | 2146168 - 2148078 | 73295.2 |
| ragb/susd domain-containing protein | SAMN06297358_1819 | Not Available | Negative | 2148071 - 2149519 | 53767.1 |
| tonb-linked outer membrane protein, susc/raga family | SAMN06297358_1820 | Not Available | Negative | 2149541 - 2152789 | 119159.0 |
| fecr family protein | SAMN06297358_1821 | Not Available | Negative | 2152849 - 2153910 | 39822.2 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN06297358_1822 | Not Available | Negative | 2153944 - 2154480 | 21288.4 |
| predicted purr-regulated permease perm | SAMN06297358_1823 | Not Available | Positive | 2154693 - 2155814 | 41935.4 |
| hypothetical protein | SAMN06297358_1824 | Not Available | Positive | 2155798 - 2156109 | 11323.0 |
| xtp/ditp diphosphohydrolase | SAMN06297358_1825 | Not Available | Positive | 2156112 - 2156918 | 30976.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

