Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter xixiisoli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1550273 bp
Thymine Count
1549681 bp
Guanine Count
942263 bp
Cytosine Count
932424 bp
Genome Length
4974702 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
48 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| membrane fusion protein, multidrug efflux system | SAMN06297358_1792 | Not Available | Positive | 2115929 - 2116990 | 39172.9 |
| hydrophobic/amphiphilic exporter-1, hae1 family | SAMN06297358_1793 | Not Available | Positive | 2117010 - 2120183 | 115954.0 |
| efflux transporter, outer membrane factor (omf) lipoprotein, nodt family | SAMN06297358_1794 | Not Available | Positive | 2120176 - 2121612 | 53376.8 |
| beta-barrel assembly machine subunit bamd | SAMN06297358_1795 | Not Available | Positive | 2121846 - 2122790 | 36428.2 |
| rna polymerase rpb6 | SAMN06297358_1796 | Not Available | Positive | 2122792 - 2123118 | 12411.5 |
| phosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligase | SAMN06297358_1797 | Not Available | Positive | 2123243 - 2124445 | 43514.8 |
| protein of unknown function | SAMN06297358_1798 | Not Available | Positive | 2124467 - 2125363 | 33362.5 |
| predicted transcriptional regulator | SAMN06297358_1799 | Not Available | Positive | 2125476 - 2125853 | 14248.2 |
| signal transducer regulating beta-lactamase production, contains metallopeptidase domain | SAMN06297358_1800 | Not Available | Positive | 2125856 - 2127784 | 73721.5 |
| outer membrane receptor proteins, mostly fe transport | SAMN06297358_1801 | Not Available | Negative | 2128472 - 2130895 | 90981.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

