Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter xixiisoli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1550273 bp
Thymine Count
1549681 bp
Guanine Count
942263 bp
Cytosine Count
932424 bp
Genome Length
4974702 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
48 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna-binding transcriptional regulator, gntr family | SAMN06297358_1772 | Not Available | Negative | 2092239 - 2092877 | 24228.3 |
| heparin/heparan-sulfate lyase | SAMN06297358_1773 | Not Available | Negative | 2092938 - 2095652 | 103635.0 |
| protein of unknown function | SAMN06297358_1774 | Not Available | Negative | 2095672 - 2096667 | 36000.1 |
| hypothetical protein | SAMN06297358_1775 | Not Available | Negative | 2096678 - 2097076 | 14899.4 |
| starch-binding associating with outer membrane | SAMN06297358_1776 | Not Available | Negative | 2097194 - 2099026 | 68384.8 |
| tonb-linked outer membrane protein, susc/raga family | SAMN06297358_1777 | Not Available | Negative | 2099038 - 2102211 | 117663.0 |
| glucose/arabinose dehydrogenase, beta-propeller fold | SAMN06297358_1778 | Not Available | Positive | 2102440 - 2103945 | 55953.8 |
| mn2+ and fe2+ transporters of the nramp family | SAMN06297358_1779 | Not Available | Positive | 2103949 - 2105178 | 43851.3 |
| nucleoside-diphosphate-sugar epimerase | SAMN06297358_1780 | Not Available | Positive | 2105185 - 2106204 | 37418.8 |
| dihydrodipicolinate synthase/n-acetylneuraminate lyase | SAMN06297358_1781 | Not Available | Positive | 2106204 - 2107268 | 39857.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

