Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter xixiisoli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1550273 bp
Thymine Count
1549681 bp
Guanine Count
942263 bp
Cytosine Count
932424 bp
Genome Length
4974702 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
48 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN06297358_1688 | Not Available | Negative | 2013217 - 2013807 | 22221.2 |
| thymidylate synthase | SAMN06297358_1689 | Not Available | Positive | 2014087 - 2014881 | 30287.3 |
| four helix bundle protein | SAMN06297358_1690 | Not Available | Positive | 2014949 - 2015326 | 14597.5 |
| dihydrofolate reductase | SAMN06297358_1691 | Not Available | Positive | 2015360 - 2015848 | 18500.2 |
| hypothetical protein | SAMN06297358_1692 | Not Available | Positive | 2015876 - 2016346 | 18370.5 |
| secd/secf fusion protein | SAMN06297358_1693 | Not Available | Positive | 2016498 - 2019458 | 107187.0 |
| nadh dehydrogenase | SAMN06297358_1694 | Not Available | Positive | 2020233 - 2021528 | 47955.2 |
| methylglyoxal synthase | SAMN06297358_1695 | Not Available | Positive | 2021509 - 2021958 | 16573.0 |
| hydroxymethylglutaryl-coa lyase | SAMN06297358_1696 | Not Available | Positive | 2021933 - 2022808 | 32142.6 |
| camp-binding domain of crp or a regulatory subunit of camp-dependent protein kinases | SAMN06297358_1697 | Not Available | Negative | 2022813 - 2023367 | 21013.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

