Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter xixiisoli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1550273 bp
Thymine Count
1549681 bp
Guanine Count
942263 bp
Cytosine Count
932424 bp
Genome Length
4974702 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
48 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rna polymerase sigma-70 factor, ecf subfamily | SAMN06297358_1668 | Not Available | Positive | 1991817 - 1992365 | 21048.3 |
| hypothetical protein | SAMN06297358_1669 | Not Available | Positive | 1992373 - 1993707 | 48989.7 |
| hypothetical protein | SAMN06297358_1670 | Not Available | Positive | 1993714 - 1994016 | 11397.1 |
| prolyl oligopeptidase family protein | SAMN06297358_1671 | Not Available | Positive | 1994104 - 1996527 | 89322.5 |
| dinb superfamily protein | SAMN06297358_1672 | Not Available | Positive | 1996673 - 1997161 | 18663.6 |
| trna pseudouridine38-40 synthase | SAMN06297358_1673 | Not Available | Positive | 1997166 - 1997963 | 31351.5 |
| muts domain iii | SAMN06297358_1674 | Not Available | Positive | 1998040 - 1999389 | 51176.4 |
| hypothetical protein | SAMN06297358_1675 | Not Available | Positive | 1999472 - 1999666 | 7096.46 |
| Trna-arg | Not Available | Not Available | Positive | 1999706 - 1999780 | Not Available |
| ectoine hydroxylase-related dioxygenase, phytanoyl-coa dioxygenase (phyh) family | SAMN06297358_1677 | Not Available | Negative | 2000049 - 2001023 | 37145.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

