Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter xixiisoli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1550273 bp
Thymine Count
1549681 bp
Guanine Count
942263 bp
Cytosine Count
932424 bp
Genome Length
4974702 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
48 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN06297358_1628 | Not Available | Positive | 1950041 - 1950646 | 23704.3 |
| nudix domain-containing protein | SAMN06297358_1629 | Not Available | Negative | 1950692 - 1951264 | 21740.7 |
| orotate phosphoribosyltransferase | SAMN06297358_1630 | Not Available | Positive | 1951302 - 1951946 | 23532.2 |
| polyketide cyclase / dehydrase and lipid transport | SAMN06297358_1631 | Not Available | Positive | 1951983 - 1952378 | 14462.4 |
| hypothetical protein | SAMN06297358_1632 | Not Available | Negative | 1952451 - 1952543 | 3701.7 |
| predicted arabinose efflux permease, mfs family | SAMN06297358_1633 | Not Available | Negative | 1952648 - 1953880 | 45155.7 |
| atp-dependent clp protease atp-binding subunit clpb | SAMN06297358_1634 | Not Available | Positive | 1954204 - 1956801 | 97461.5 |
| outer membrane protein beta-barrel domain-containing protein | SAMN06297358_1635 | Not Available | Positive | 1957282 - 1957896 | 21497.5 |
| hypothetical protein | SAMN06297358_1636 | Not Available | Negative | 1957968 - 1958870 | 33777.1 |
| hypothetical protein | SAMN06297358_1637 | Not Available | Negative | 1958881 - 1959279 | 15351.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

