Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter xixiisoli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1550273 bp
Thymine Count
1549681 bp
Guanine Count
942263 bp
Cytosine Count
932424 bp
Genome Length
4974702 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
48 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| transcriptional regulator, badm/rrf2 family | SAMN06297358_1618 | Not Available | Negative | 1942187 - 1942624 | 16162.9 |
| t/g mismatch-specific endonuclease | SAMN06297358_1619 | Not Available | Negative | 1942839 - 1943345 | 20250.8 |
| histidine kinase | SAMN06297358_1620 | Not Available | Positive | 1943415 - 1944587 | 44888.2 |
| two component transcriptional regulator, lyttr family | SAMN06297358_1621 | Not Available | Positive | 1944584 - 1945327 | 28320.3 |
| exodeoxyribonuclease-5 | SAMN06297358_1622 | Not Available | Negative | 1945324 - 1946775 | 54472.2 |
| protein of unknown function | SAMN06297358_1623 | Not Available | Positive | 1946978 - 1947802 | 31198.8 |
| 16s rrna (guanine(966)-n(2))-methyltransferase rsmd | SAMN06297358_1624 | Not Available | Positive | 1947793 - 1948323 | 20025.2 |
| phosphopantetheine adenylyltransferase | SAMN06297358_1625 | Not Available | Positive | 1948434 - 1948895 | 17213.9 |
| hypothetical protein | SAMN06297358_1626 | Not Available | Negative | 1948896 - 1949333 | 16305.4 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN06297358_1627 | Not Available | Positive | 1949548 - 1950051 | 19861.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

