Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter xixiisoli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1550273 bp
Thymine Count
1549681 bp
Guanine Count
942263 bp
Cytosine Count
932424 bp
Genome Length
4974702 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
48 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| acetyl xylan esterase (axe1) | SAMN06297358_1558 | Not Available | Negative | 1862233 - 1864212 | 73941.2 |
| pectate lyase, pela/pel-15e family | SAMN06297358_1559 | Not Available | Negative | 1864268 - 1865299 | 38415.0 |
| unsaturated rhamnogalacturonyl hydrolase | SAMN06297358_1560 | Not Available | Negative | 1865379 - 1867313 | 72747.5 |
| pectate lyase superfamily protein | SAMN06297358_1561 | Not Available | Negative | 1867317 - 1868996 | 61170.4 |
| tonb-dependent receptor plug domain | SAMN06297358_1562 | Not Available | Negative | 1869242 - 1871665 | 90550.0 |
| beta-xylosidase | SAMN06297358_1563 | Not Available | Negative | 1871761 - 1873383 | 60215.4 |
| polygalacturonase | SAMN06297358_1564 | Not Available | Negative | 1873411 - 1874661 | 46343.0 |
| hypothetical protein | SAMN06297358_1565 | Not Available | Negative | 1874856 - 1876331 | 53155.8 |
| pectinesterase | SAMN06297358_1566 | Not Available | Negative | 1876429 - 1877391 | 36531.5 |
| pectinesterase | SAMN06297358_1567 | Not Available | Negative | 1877464 - 1878453 | 37068.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

