Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter xixiisoli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1550273 bp
Thymine Count
1549681 bp
Guanine Count
942263 bp
Cytosine Count
932424 bp
Genome Length
4974702 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
48 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| gtra-like protein | SAMN06297358_1498 | Not Available | Positive | 1794577 - 1795071 | 18945.4 |
| protein of unknown function | SAMN06297358_1499 | Not Available | Negative | 1795061 - 1795837 | 30203.2 |
| dolichol-phosphate mannosyltransferase | SAMN06297358_1500 | Not Available | Negative | 1795840 - 1796766 | 35114.8 |
| protein of unknown function | SAMN06297358_1501 | Not Available | Negative | 1796763 - 1797926 | 44724.6 |
| aldose 1-epimerase | SAMN06297358_1502 | Not Available | Negative | 1797945 - 1798988 | 38711.8 |
| spou rrna methylase family protein | SAMN06297358_1503 | Not Available | Positive | 1799177 - 1799707 | 19872.1 |
| bacteriocin-protection, ydei or ompd-associated | SAMN06297358_1504 | Not Available | Positive | 1799794 - 1800456 | 24716.6 |
| outer membrane autotransporter barrel domain-containing protein | SAMN06297358_1505 | Not Available | Positive | 1800513 - 1801130 | 21845.4 |
| nad-dependent deacetylase | SAMN06297358_1506 | Not Available | Negative | 1801255 - 1801938 | 25034.2 |
| hypothetical protein | SAMN06297358_1507 | Not Available | Negative | 1802332 - 1802910 | 21404.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

