Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter xixiisoli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1550273 bp
Thymine Count
1549681 bp
Guanine Count
942263 bp
Cytosine Count
932424 bp
Genome Length
4974702 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
48 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN06297358_1324 | Not Available | Positive | 1636645 - 1636941 | 10979.3 |
| uncharacterized protein, duf1810 family | SAMN06297358_1325 | Not Available | Positive | 1636990 - 1637409 | 15963.2 |
| hypothetical protein | SAMN06297358_1326 | Not Available | Positive | 1637464 - 1637679 | 8390.27 |
| pas domain s-box-containing protein | SAMN06297358_1328 | Not Available | Positive | 1638598 - 1639704 | 42342.5 |
| cold-shock dna-binding protein family | SAMN06297358_1330 | Not Available | Negative | 1640261 - 1640452 | 6886.14 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN06297358_1331 | Not Available | Negative | 1640583 - 1641092 | 19594.5 |
| response regulator receiver domain-containing protein | SAMN06297358_1332 | Not Available | Positive | 1641388 - 1641741 | 13357.2 |
| uncharacterized membrane protein | SAMN06297358_1333 | Not Available | Positive | 1641867 - 1642730 | 31435.7 |
| dna-n1-methyladenine dioxygenase | SAMN06297358_1334 | Not Available | Positive | 1642971 - 1643579 | 23275.0 |
| low affinity fe/cu permease | SAMN06297358_1335 | Not Available | Positive | 1643942 - 1644433 | 18525.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

