Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter xixiisoli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1550273 bp
Thymine Count
1549681 bp
Guanine Count
942263 bp
Cytosine Count
932424 bp
Genome Length
4974702 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
48 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| starch synthase | SAMN06297358_0118 | Not Available | Positive | 128005 - 129462 | 55084.6 |
| glucose-1-phosphate adenylyltransferase | SAMN06297358_0119 | Not Available | Positive | 129477 - 130748 | 46922.2 |
| hypothetical protein | SAMN06297358_0120 | Not Available | Negative | 130892 - 131572 | 26102.6 |
| glucoamylase (glucan-1,4-alpha-glucosidase), gh15 family | SAMN06297358_0121 | Not Available | Positive | 131702 - 133486 | 68517.2 |
| trehalose 6-phosphate synthase /trehalose 6-phosphatase | SAMN06297358_0122 | Not Available | Negative | 133589 - 135766 | 83303.3 |
| abc-type fe3+-hydroxamate transport system, substrate-binding protein | SAMN06297358_0123 | Not Available | Positive | 135941 - 136705 | 29390.8 |
| hypothetical protein | SAMN06297358_0124 | Not Available | Positive | 136769 - 137641 | 32790.3 |
| Trna-leu | Not Available | Not Available | Positive | 137766 - 137847 | Not Available |
| trigger factor | SAMN06297358_0126 | Not Available | Positive | 137988 - 139334 | 51108.4 |
| atp-dependent clp protease, protease subunit | SAMN06297358_0127 | Not Available | Positive | 139666 - 140352 | 25451.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

