Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter xixiisoli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1550273 bp
Thymine Count
1549681 bp
Guanine Count
942263 bp
Cytosine Count
932424 bp
Genome Length
4974702 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
48 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| predicted zn-dependent peptidase | SAMN06297358_0108 | Not Available | Positive | 112725 - 113999 | 47531.5 |
| transglutaminase-like superfamily protein | SAMN06297358_0109 | Not Available | Negative | 114149 - 116044 | 71570.6 |
| transglutaminase-like superfamily protein | SAMN06297358_0110 | Not Available | Negative | 116177 - 118162 | 76196.6 |
| outer membrane protein assembly factor bamb, contains pqq-like beta-propeller repeat | SAMN06297358_0111 | Not Available | Negative | 118225 - 120057 | 68018.3 |
| hypothetical protein | SAMN06297358_0112 | Not Available | Negative | 120176 - 120523 | 12838.3 |
| imp dehydrogenase | SAMN06297358_0113 | Not Available | Positive | 120880 - 122352 | 52497.8 |
| iron complex outermembrane recepter protein | SAMN06297358_0114 | Not Available | Positive | 123113 - 125755 | 95605.5 |
| hypothetical protein | SAMN06297358_0115 | Not Available | Positive | 125920 - 126588 | 24631.3 |
| hypothetical protein | SAMN06297358_0116 | Not Available | Negative | 126878 - 126967 | 3404.18 |
| uroporphyrin-iii c-methyltransferase | SAMN06297358_0117 | Not Available | Positive | 126996 - 127793 | 28706.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

