Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter xixiisoli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1550273 bp
Thymine Count
1549681 bp
Guanine Count
942263 bp
Cytosine Count
932424 bp
Genome Length
4974702 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
48 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| starvation-inducible dna-binding protein | SAMN06297358_1104 | Not Available | Negative | 1366164 - 1366643 | 18445.2 |
| lysm repeat-containing protein | SAMN06297358_1105 | Not Available | Positive | 1366809 - 1368146 | 48562.1 |
| uridine kinase | SAMN06297358_1106 | Not Available | Positive | 1368136 - 1368777 | 24788.4 |
| mfs transporter, opa family, glycerol-3-phosphate transporter/mfs transporter, opa family, sugar phosphate sensor protein uhpc | SAMN06297358_1107 | Not Available | Positive | 1368952 - 1370442 | 54389.9 |
| nagd protein | SAMN06297358_1108 | Not Available | Positive | 1370448 - 1371284 | 30735.0 |
| ompa family protein | SAMN06297358_1109 | Not Available | Positive | 1371633 - 1372841 | 44111.5 |
| cold shock protein (beta-ribbon, cspa family) | SAMN06297358_1110 | Not Available | Negative | 1372908 - 1373105 | 7241.55 |
| alkyl hydroperoxide reductase subunit ahpc (peroxiredoxin) | SAMN06297358_1111 | Not Available | Negative | 1373185 - 1373820 | 23423.8 |
| uncharacterized conserved protein yece, duf72 family | SAMN06297358_1112 | Not Available | Negative | 1373906 - 1374829 | 35520.5 |
| trypsin-like peptidase domain-containing protein | SAMN06297358_1113 | Not Available | Negative | 1375001 - 1376104 | 40237.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

