Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter xixiisoli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1550273 bp
Thymine Count
1549681 bp
Guanine Count
942263 bp
Cytosine Count
932424 bp
Genome Length
4974702 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
48 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN06297358_1063 | Not Available | Negative | 1325489 - 1325797 | 11952.2 |
| atp-dependent dna helicase recq | SAMN06297358_1064 | Not Available | Negative | 1325873 - 1327765 | 71992.1 |
| imidazolonepropionase | SAMN06297358_1065 | Not Available | Positive | 1327981 - 1331232 | 120816.0 |
| radical sam superfamily enzyme ygiq, upf0313 family | SAMN06297358_1066 | Not Available | Negative | 1331513 - 1333708 | 83474.1 |
| hypothetical protein | SAMN06297358_1067 | Not Available | Negative | 1333859 - 1335049 | 43913.6 |
| 5-(carboxyamino)imidazole ribonucleotide synthase | SAMN06297358_1068 | Not Available | Positive | 1335458 - 1336597 | 42342.0 |
| 5-(carboxyamino)imidazole ribonucleotide mutase | SAMN06297358_1069 | Not Available | Positive | 1336668 - 1337150 | 16736.4 |
| tryptophanyl-trna synthetase | SAMN06297358_1070 | Not Available | Positive | 1337316 - 1338314 | 37500.7 |
| deoxyadenosine/deoxycytidine kinase | SAMN06297358_1071 | Not Available | Positive | 1338325 - 1339011 | 26599.6 |
| 3-deoxy-manno-octulosonate cytidylyltransferase (cmp-kdo synthetase) | SAMN06297358_1072 | Not Available | Positive | 1339063 - 1339794 | 27818.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

