Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter xixiisoli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1550273 bp
Thymine Count
1549681 bp
Guanine Count
942263 bp
Cytosine Count
932424 bp
Genome Length
4974702 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
48 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| mfs transporter, dha1 family, tetracycline resistance protein | SAMN06297358_1043 | Not Available | Positive | 1304415 - 1305629 | 44097.2 |
| tigr01666 family membrane protein | SAMN06297358_1044 | Not Available | Positive | 1305796 - 1307952 | 82304.6 |
| peroxiredoxin, ohr subfamily | SAMN06297358_1045 | Not Available | Positive | 1308115 - 1308525 | 14167.4 |
| magnesium transporter | SAMN06297358_1046 | Not Available | Negative | 1308644 - 1309993 | 49702.8 |
| protein of unknown function | SAMN06297358_1047 | Not Available | Negative | 1310013 - 1310717 | 26411.3 |
| hypothetical protein | SAMN06297358_1048 | Not Available | Negative | 1310717 - 1311328 | 22619.4 |
| putative mrna 3-end processing factor | SAMN06297358_1049 | Not Available | Positive | 1311457 - 1312485 | 38119.2 |
| dna ligase-1 | SAMN06297358_1050 | Not Available | Positive | 1312486 - 1314078 | 60955.7 |
| atp-dependent helicase lhr and lhr-like helicase | SAMN06297358_1051 | Not Available | Positive | 1314183 - 1316633 | 92546.7 |
| putative phosphoesterase | SAMN06297358_1052 | Not Available | Positive | 1316745 - 1317380 | 24334.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

