Sphingobium indicum F2

Gram-negativeRodNon-motileAerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingobiaceae

Genus

Sphingobium

Description

Sphingobium indicum F2 is a Gram-negative, aerobic bacterium characterized by its rod shape and the presence of flagella. This organism is mesophilic, with an optimal growth temperature of 28°C, indicating that it thrives in moderate temperature environments. Sphingobium indicum F2 possesses a single replicon and is notable for having two membranes, which is typical for Gram-negative bacteria. This species is free-living, suggesting that it does not engage in symbiotic relationships with other organisms and occupies terrestrial habitats. The absence of mobility indicates that while it has flagella, it may not effectively use them for movement, which is an interesting trait for a bacterium in its ecological niche. The ecological role of Sphingobium indicum F2 may involve participating in nutrient cycling in terrestrial ecosystems, particularly in environments where organic compounds are present. Its ability to thrive in aerobic conditions suggests it may play a role in the degradation of organic materials, contributing to soil health and fertility. Understanding the metabolic pathways and interactions of Sphingobium indicum F2 could provide insights into its function in the environment, particularly in bioremediation processes or soil microbiome dynamics. The accession number for this strain is JANF00000000.2, which may serve as a reference for further genomic and functional studies.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingobiaceae
GenusSphingobium
SpeciesSphingobium indicum
StrainF2

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Sphingobium indicum F2
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobic
Optimal temperature28
Temperature rangeMesophilic
HabitatTerrestrial
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingobium indicum F2 contig103, whole genome shotgun sequence.

Gene Summary

Adenine Count

790725 bp

Thymine Count

793264 bp

Guanine Count

1421722 bp

Cytosine Count

1437046 bp

Genome Length

4442759 bp

Protein-coding Genes

4079 genes

Non-Coding Genes

82 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
phytoene dehydrogenaseAL00_07790Not AvailableNegative1515625 - 151710654502.9
lycopene cyclaseAL00_07795Not AvailableNegative1517120 - 151828043083.7
transcriptional regulatorAL00_07800Not AvailablePositive1518504 - 15187769775.93
cation transporterAL00_07805Not AvailablePositive1518773 - 151975935391.4
membrane proteinAL00_07810Not AvailableNegative1519952 - 152113641862.2
hypothetical proteinAL00_07815Not AvailableNegative1521136 - 152156414675.4
atp-dependent dna helicase recqAL00_07820Not AvailableNegative1521933 - 152370564479.2
hypothetical proteinAL00_07825Not AvailableNegative1523865 - 152417911327.8
beta-lactamaseAL00_07830Not AvailablePositive1524218 - 152534240108.4
phzf family phenazine biosynthesis proteinAL00_07835Not AvailableNegative1525532 - 152632027992.5

Displaying genes 1511 – 1520 of 4161 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.