Escherichia coli 2-005-03_S4_C2

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli 2-005-03_S4_C2 is a gram-negative, rod-shaped bacterium that exhibits a facultative anaerobic lifestyle, allowing it to thrive in both the presence and absence of oxygen. This strain is characterized by its mobility, which is facilitated by the presence of flagella. E. coli 2-005-03_S4_C2 typically resides in host-associated environments, indicating a potential symbiotic or commensal relationship within its habitat. The bacterium's optimal growth temperature is 37°C, placing it within the mesophilic temperature range, which is conducive to its survival in warm-blooded hosts. E. coli 2-005-03_S4_C2 possesses a single replicon and is encapsulated by two membranes, a hallmark of gram-negative bacteria. In terms of its ecological role, E. coli 2-005-03_S4_C2 is classified as free-living, suggesting it can exist independently of a host while still being associated with host environments. This dual capability highlights the versatility of E. coli species in various ecological niches. Overall, the adaptability of E. coli 2-005-03_S4_C2 to different oxygen levels and its ability to thrive at body temperature underscore its significance in both environmental and host-associated contexts, reflecting the broader ecological role of E. coli within microbial communities. The accession number for this strain is JJLN00000000.1, which can be referenced for further genomic insights.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
Strain2-005-03_S4_C2

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli 2-005-03_S4_C2
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Escherichia coli 2-005-03_S4_C2


Gene Summary

Adenine Count

1283352 bp

Thymine Count

1281657 bp

Guanine Count

1318011 bp

Cytosine Count

1317749 bp

Genome Length

5200769 bp

Protein-coding Genes

5301 genes

Non-Coding Genes

379 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Putative tail proteinAC93_4808Not AvailableNegative27572 - 2827025819.4
Trna-met;Not AvailableNot AvailablePositive27793 - 27869Not Available
Trna-met;Not AvailableNot AvailablePositive27903 - 27979Not Available
Trna-met;Not AvailableNot AvailablePositive28013 - 28089Not Available
Trna-met;Not AvailableNot AvailablePositive28123 - 28199Not Available
Trna-met;Not AvailableNot AvailablePositive28233 - 28309Not Available
outer membrane porin protein ompdAC93_4809Not AvailableNegative28467 - 2962141917.4
rrna,type:5sNot AvailableNot AvailablePositive28779 - 2889118.01
Trna-thr;Not AvailableNot AvailablePositive28934 - 29009Not Available
Trna-sec;Not AvailableNot AvailablePositive29401 - 29491Not Available

Displaying genes 1 – 10 of 5680 in total

Metabolites

4785 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da

Displaying 1–10 of 4785 metabolites

Health Effects

No health effects information available for this bacterium.