Algoriphagus boseongensis str. CECT 8446

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Cytophagia

Order

Cytophagales

Family

Cyclobacteriaceae

Genus

Algoriphagus

Description

Algoriphagus boseongensis str. CECT 8446 is a Gram-negative, rod-shaped bacterium. This organism is characterized by having a single replicon, which is indicative of its genetic structure and replication mechanism. The strain is cataloged under the accession number SNYF00000000.1, providing a reference for researchers interested in its genomic information. As a member of the genus Algoriphagus, A. boseongensis may be associated with specific ecological niches, particularly in marine environments. The Gram-negative classification suggests that it possesses a thin peptidoglycan layer and an outer membrane, characteristics typical of bacteria that can thrive in diverse conditions, including those with varying osmotic pressures. The ecological role of Algoriphagus species often involves the degradation of organic matter, contributing to nutrient cycling within their habitats. Given the characteristics of A. boseongensis, it may play a significant role in the breakdown of substrates in marine ecosystems, aiding in the maintenance of ecological balance. Understanding the specific functions and interactions of A. boseongensis within its environment could provide insights into its potential applications in bioremediation or other biotechnological processes.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilyCyclobacteriaceae
GenusAlgoriphagus
SpeciesAlgoriphagus boseongensis
StrainCECT 8446

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Algoriphagus boseongensis str. CECT 8446


Gene Summary

Adenine Count

1221801 bp

Thymine Count

1237611 bp

Guanine Count

872643 bp

Cytosine Count

843789 bp

Genome Length

4176921 bp

Protein-coding Genes

3619 genes

Non-Coding Genes

43 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
type ix secretion system porp/sprf family membrane proteinDFQ04_0002Not AvailablePositive1010 - 198436283.2
outer membrane protein ompa-like peptidoglycan-associated proteinDFQ04_0003Not AvailablePositive1975 - 433489307.2
transposase inso family proteinDFQ04_0005Not AvailableNegative4344 - 516831948.5
transposaseDFQ04_0006Not AvailableNegative5165 - 555415257.6
hypothetical proteinDFQ04_0012Not AvailableNegative7929 - 11537122742.0
tetratricopeptide repeat proteinDFQ04_0013Not AvailablePositive11787 - 1380576487.9
luxr family two component transcriptional regulatorDFQ04_0014Not AvailablePositive13848 - 1448023767.2
hypothetical proteinDFQ04_0015Not AvailableNegative14574 - 1498715935.1
hypothetical proteinDFQ04_0016Not AvailableNegative15096 - 1570722761.3
start domain-containing proteinDFQ04_0017Not AvailablePositive15926 - 1653723184.0

Displaying genes 1 – 10 of 3662 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

32 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm0001717fumarateC4H2O4Chemical structure of fumarateNot available
Average114.0563Da
Monoisotopic113.9953086Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0001921(S)-3-methyl-2-oxopentanoateC6H9O3Chemical structure of (S)-3-methyl-2-oxopentanoate1460-34-0
Average129.1339Da
Monoisotopic129.0551692Da
BASm0002232(2E,4Z)-5-hydroxypenta-2,4-diene-1,2,5-tricarboxylateC8H5O7Chemical structure of (2E,4Z)-5-hydroxypenta-2,4-diene-1,2,5-tricarboxylateNot available
Average213.123Da
Monoisotopic213.005173241Da
BASm0002282(2R)-2,3-dihydroxy-3-methylbutanoateC5H9O4Chemical structure of (2R)-2,3-dihydroxy-3-methylbutanoateNot available
Average133.1226Da
Monoisotopic133.0500838Da
BASm0002305(S)-2-ethyl-2-hydroxy-3-oxobutanoateC6H9O4Chemical structure of (S)-2-ethyl-2-hydroxy-3-oxobutanoateNot available
Average145.135Da
Monoisotopic145.0506324Da
BASm0002307(2R,3R)-2,3-dihydroxy-3-methylpentanoateC6H11O4Chemical structure of (2R,3R)-2,3-dihydroxy-3-methylpentanoateNot available
Average147.1491Da
Monoisotopic147.06573384Da

Displaying 1–10 of 32 metabolites

Health Effects

No health effects information available for this bacterium.