Xenorhabdus nematophila AN6/1

Gram-negativeRodNon-motileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Morganellaceae

Genus

Xenorhabdus

Description

Xenorhabdus nematophila AN6/1 is a Gram-negative, rod-shaped bacterium that exists in a host-associated habitat, indicating its relationship with nematodes. It is classified as a facultative anaerobe, allowing it to thrive in both the presence and absence of oxygen. This species possesses two membranes, characteristic of Gram-negative bacteria, and has a single replicon, which refers to the structure of its genetic material. Notably, Xenorhabdus nematophila AN6/1 is non-motile, lacking flagella for movement, yet it may still be capable of interacting with its environment through other means. This bacterium is mesophilic, indicating that it grows optimally at moderate temperatures, typically between 20°C and 45°C. In terms of its ecological role, Xenorhabdus nematophila AN6/1 is free-living and is known for its biotic interactions, particularly with nematodes, where it often acts as a symbiotic partner. This relationship is significant as it facilitates the bacterium's survival and reproduction within host organisms, while also contributing to the nematode's life cycle. Overall, the traits of Xenorhabdus nematophila AN6/1 highlight its adaptations to a specific ecological niche, where its non-motility and association with host organisms allow it to thrive in a competitive environment, ultimately influencing the dynamics of the ecosystems it inhabits. Accessions for this strain can be found under the identifier NZ_LN681228.1.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyMorganellaceae
GenusXenorhabdus
SpeciesXenorhabdus nematophila
StrainAN6/1

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Xenorhabdus nematophila AN6/1
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Xenorhabdus nematophila AN6/1


Gene Summary

Adenine Count

42600 bp

Thymine Count

40955 bp

Guanine Count

36812 bp

Cytosine Count

34192 bp

Genome Length

154559 bp

Protein-coding Genes

185 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
para family proteinXNC2_RS19600Not AvailablePositive151 - 93628669.7
parb/repb/spo0j family partition proteinXNC2_RS19605Not AvailablePositive940 - 211543443.0
helix-turn-helix domain-containing proteinXNC2_RS19610Not AvailablePositive2164 - 243610313.5
n-6 dna methylaseXNC2_RS19615Not AvailableNegative2488 - 312323496.1
hypothetical proteinXNC2_RS23400Not AvailableNegative3211 - 33545491.77
hypothetical proteinXNC2_RS19620Not AvailablePositive3674 - 405113680.4
hypothetical proteinXNC2_RS19630Not AvailablePositive4282 - 44888019.5
hypothetical proteinXNC2_RS19635Not AvailableNegative4516 - 492014533.3
dna topoisomerase 3XNC2_RS19640Not AvailableNegative4931 - 712080868.4
hypothetical proteinXNC2_RS19645Not AvailableNegative7120 - 73538487.08

Displaying genes 1 – 10 of 185 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

6 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm00027107,8-dihydrofolateC19H19N7O6Chemical structure of 7,8-dihydrofolateNot available
Average441.405Da
Monoisotopic441.1407785Da
BASm00034704-(phosphooxy)-L-threonineC4H8NO7PChemical structure of 4-(phosphooxy)-L-threonineNot available
Average213.083Da
Monoisotopic213.0049358Da
BASm0003537(R)-3-hydroxy-2-oxo-4-phosphooxybutanoateC4H4O8PChemical structure of (R)-3-hydroxy-2-oxo-4-phosphooxybutanoateNot available
Average211.043Da
Monoisotopic210.9660248Da
BASm0009632(2S)-3-(4-hydroxyphenyl)-2-isocyanopropanoateC10H8NO3Chemical structure of (2S)-3-(4-hydroxyphenyl)-2-isocyanopropanoateNot available
Average190.179Da
Monoisotopic190.050966702Da
BASm00107383-phosphoshikimateC7H8O8PChemical structure of 3-phosphoshikimateNot available
Average251.108Da
Monoisotopic250.997324955Da

Displaying 1–6 of 6 metabolites

Health Effects

No health effects information available for this bacterium.