Rhodococcus pyridinivorans SB3094

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Mycobacteriales

Family

Nocardiaceae

Genus

Rhodococcus

Description

Rhodococcus pyridinivorans SB3094 is a notable bacterial species characterized by the presence of flagella, which contributes to its motility. This species possesses three replicons, indicating a complex genomic organization that may play a role in its adaptability and metabolic capabilities. The genetic information of R. pyridinivorans SB3094 is documented in multiple accession numbers, specifically NC_023144.1, NC_023145.1, and NC_023150.1. These accession numbers correspond to the genomic sequences available in public databases, which can facilitate further research into the organism's genetics and functions. Rhodococcus species, including R. pyridinivorans, are well-known for their ability to degrade a variety of organic compounds, including pollutants. This trait allows them to play a significant role in bioremediation processes, where they can help to clean up contaminated environments. The presence of flagella may enhance their ability to navigate toward pollutants, thereby improving their effectiveness in such ecological roles. In summary, R. pyridinivorans SB3094 is equipped with flagella and possesses a complex genomic structure with three replicons, which may underpin its ecological significance in bioremediation efforts. The understanding of its genetic makeup and motility can provide insights into its potential applications in environmental microbiology.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMycobacteriales
FamilyNocardiaceae
GenusRhodococcus
SpeciesRhodococcus pyridinivorans
StrainSB3094

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhodococcus pyridinivorans SB3094 plasmid unnamed, complete

Gene Summary

Adenine Count

64015 bp

Thymine Count

62308 bp

Guanine Count

115898 bp

Cytosine Count

119176 bp

Genome Length

361397 bp

Protein-coding Genes

350 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
p1 family peptidaseY013_RS00135Not AvailablePositive31178 - 3230836899.8
rhomboid family intramembrane serine proteaseY013_RS00140Not AvailablePositive32335 - 3296122040.0
cyclic nucleotide-degrading phosphodiesteraseY013_RS00145Not AvailablePositive33105 - 3386626547.4
ribonuclease phY013_RS00150Not AvailablePositive33901 - 3468927939.3
rdgb/ham1 family non-canonical purine ntp pyrophosphataseY013_RS00155Not AvailablePositive34697 - 3530821367.0
sulfate adenylyltransferase subunit cysdY013_RS28110Not AvailableNegative35498 - 3579111081.1
hypothetical proteinY013_RS00165Not AvailableNegative35910 - 361017198.82
atp-binding proteinY013_RS00170Not AvailableNegative36309 - 3679117631.3
stas domain-containing proteinY013_RS00175Not AvailableNegative36847 - 3720311967.4
pp2c family protein-serine/threonine phosphataseY013_RS00180Not AvailablePositive37380 - 3856442266.1

Displaying genes 391 – 400 of 5222 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.