Candidatus Endomicrobium trichonymphae str. CET450

Kingdom

Pseudomonadati

Phylum

Elusimicrobiota

Class

Endomicrobiia

Order

Endomicrobiales

Family

Endomicrobiaceae

Genus

Candidatus Endomicrobiellum

Description

Candidatus Endomicrobium trichonymphae strain CET450 is a symbiotic bacterium primarily associated with the host organism Trichonympha agilis. This bacterium is notable for its unique habitat, which is exclusively host-associated, indicating a close ecological relationship with its host. CET450 is characterized by having a single replicon, which is a defining feature of its genomic structure. This single replicon may suggest a streamlined genome that is adapted to its specific lifestyle within the host. The accession number for this strain is LNVX00000000.1, which serves as a reference for genomic data and further research. The association between Candidatus Endomicrobium trichonymphae and Trichonympha agilis highlights the importance of microbial symbiosis in the digestive processes of certain protozoan hosts. The presence of this bacterium within Trichonympha suggests it may play a role in nutrient acquisition or metabolic processes, contributing to the overall health and efficiency of its host. This relationship exemplifies the intricate interactions between microorganisms and their hosts, emphasizing the significance of symbiotic relationships in ecological systems. Understanding such dynamics can provide insights into the complexities of microbial communities and their roles in broader ecological contexts.

Taxonomy

KingdomPseudomonadati
PhylumElusimicrobiota
ClassEndomicrobiia
OrderEndomicrobiales
FamilyEndomicrobiaceae
GenusCandidatus Endomicrobiellum
SpeciesCandidatus Endomicrobiellum trichonymphae
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatHostAssociated
Biotic relationshipNot Available
Host(s)Trichonympha agilis
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Candidatus Endomicrobium trichonymphae str. CET450


Gene Summary

Adenine Count

1079731 bp

Thymine Count

1085183 bp

Guanine Count

588414 bp

Cytosine Count

620516 bp

Genome Length

3373858 bp

Protein-coding Genes

2869 genes

Non-Coding Genes

151 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinATZ36_11765Not AvailablePositive701 - 8927363.09
Ncrna_class:rnase_p_rnaNot AvailableNot AvailablePositive726 - 1072Not Available
hypothetical proteinATZ36_11770Not AvailablePositive941 - 153421678.4
16s ribosomal rnaNot AvailableNot AvailablePositive1804 - 3325Not Available
5s ribosomal rnaNot AvailableNot AvailablePositive2005 - 2121Not Available
adenylosuccinate lyaseATZ36_11775P74384Negative1619 - 273341213.5
hypothetical proteinATZ36_11785A9A099Negative3747 - 529258264.1
hypothetical proteinATZ36_11790O66043Negative5293 - 647544646.5
hypothetical proteinATZ36_11795Not AvailablePositive6637 - 745830344.4
hypothetical proteinATZ36_11800Not AvailablePositive7643 - 830523929.2

Displaying genes 1 – 10 of 3020 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

71 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000642S-adenosyl-4-methylsulfanyl-2-oxobutanoateC15H19N5O6SChemical structure of S-adenosyl-4-methylsulfanyl-2-oxobutanoateNot available
Average397.406Da
Monoisotopic397.105604055Da
BASm0001111keto-D-tagaturonateC6H9O7Chemical structure of keto-D-tagaturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm0001717fumarateC4H2O4Chemical structure of fumarateNot available
Average114.0563Da
Monoisotopic113.9953086Da
BASm0001779orotateC5H3N2O4Chemical structure of orotateNot available
Average155.09Da
Monoisotopic155.0098302Da
BASm0001785(2R,3R)-tartrateC4H6O6Chemical structure of (2R,3R)-tartrate87-69-4
Average150.0868Da
Monoisotopic150.0164379Da

Displaying 1–10 of 71 metabolites

Health Effects

No health effects information available for this bacterium.