Hymenobacter sp. APR13

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Cytophagia

Order

Cytophagales

Family

Hymenobacteraceae

Genus

Hymenobacter

Description

Hymenobacter sp. APR13 is a Gram-negative bacterium characterized by its rod-shaped morphology. This species is notable for having four replicons, which may suggest a complex genomic structure that could contribute to its adaptability in various environments. The genetic information of Hymenobacter sp. APR13 is accessible through multiple accession numbers: NZ_CP006587.1, NZ_CP006590.1, NZ_CP006588.1, and NZ_CP006589.1. These sequences provide valuable insights into the genomic features of this organism, allowing for further studies on its metabolic capabilities and ecological roles. As a member of the Hymenobacter genus, this bacterium is likely to be involved in nutrient cycling within its ecosystem, potentially playing a role in the degradation of organic materials. The presence of multiple replicons may offer advantages in gene regulation and metabolic flexibility, which are advantageous traits in diverse microbial communities. In summary, Hymenobacter sp. APR13 exhibits important traits such as being Gram-negative and rod-shaped, along with a complex genomic structure indicated by its four replicons. These characteristics support its potential ecological role in nutrient cycling and suggest avenues for future research into its functional capabilities within microbial ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilyHymenobacteraceae
GenusHymenobacter
SpeciesHymenobacter sp. APR13
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Hymenobacter sp. APR13 chromosome, complete genome.

Gene Summary

Adenine Count

927573 bp

Thymine Count

926829 bp

Guanine Count

1507127 bp

Cytosine Count

1509465 bp

Genome Length

4870994 bp

Protein-coding Genes

4129 genes

Non-Coding Genes

66 genes

# of Chromosomes/Plasmids

4

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ribose-phosphate pyrophosphokinaseN008_RS04300Not AvailablePositive1021993 - 102292233233.4
duf6340 family proteinN008_RS04305Not AvailablePositive1023054 - 102412439753.7
50s ribosomal protein l25/general stress protein ctcN008_RS04310Not AvailablePositive1024247 - 102481920946.7
aminoacyl-trna hydrolaseN008_RS04315Not AvailablePositive1025024 - 102559020681.0
methionine--trna ligaseN008_RS04320Not AvailableNegative1025736 - 102778176309.7
hypothetical proteinN008_RS04325Not AvailablePositive1028058 - 102870222133.2
hypothetical proteinN008_RS04330Not AvailableNegative1028787 - 102914312490.6
duf3050 domain-containing proteinN008_RS04335Not AvailableNegative1029229 - 103002629729.4
peptide-methionine (r)-s-oxide reductase msrbN008_RS04340Not AvailableNegative1030213 - 103079121470.3
translational gtpase typaN008_RS04345Not AvailablePositive1031046 - 103285467224.0

Displaying genes 891 – 900 of 4316 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

41 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da
BASm0001861(2R,3S)-3-phenylcyclohexa-3,5-diene-1,2-diolC12H12O2Chemical structure of (2R,3S)-3-phenylcyclohexa-3,5-diene-1,2-diolNot available
Average188.226Da
Monoisotopic188.0837296Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0001921(S)-3-methyl-2-oxopentanoateC6H9O3Chemical structure of (S)-3-methyl-2-oxopentanoate1460-34-0
Average129.1339Da
Monoisotopic129.0551692Da
BASm00019773,4-dihydroxybenzoateC7H5O4Chemical structure of 3,4-dihydroxybenzoateNot available
Average153.114Da
Monoisotopic153.019332221Da
BASm0002051D-fructoseC6H12O6Chemical structure of D-fructose57-48-7
Average180.1559Da
Monoisotopic180.0633881Da

Displaying 1–10 of 41 metabolites

Health Effects

No health effects information available for this bacterium.