Hymenobacter sp. APR13

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Cytophagia

Order

Cytophagales

Family

Hymenobacteraceae

Genus

Hymenobacter

Description

Hymenobacter sp. APR13 is a Gram-negative bacterium characterized by its rod-shaped morphology. This species is notable for having four replicons, which may suggest a complex genomic structure that could contribute to its adaptability in various environments. The genetic information of Hymenobacter sp. APR13 is accessible through multiple accession numbers: NZ_CP006587.1, NZ_CP006590.1, NZ_CP006588.1, and NZ_CP006589.1. These sequences provide valuable insights into the genomic features of this organism, allowing for further studies on its metabolic capabilities and ecological roles. As a member of the Hymenobacter genus, this bacterium is likely to be involved in nutrient cycling within its ecosystem, potentially playing a role in the degradation of organic materials. The presence of multiple replicons may offer advantages in gene regulation and metabolic flexibility, which are advantageous traits in diverse microbial communities. In summary, Hymenobacter sp. APR13 exhibits important traits such as being Gram-negative and rod-shaped, along with a complex genomic structure indicated by its four replicons. These characteristics support its potential ecological role in nutrient cycling and suggest avenues for future research into its functional capabilities within microbial ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilyHymenobacteraceae
GenusHymenobacter
SpeciesHymenobacter sp. APR13
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Hymenobacter sp. APR13 plasmid pHB, complete sequence.

Gene Summary

Adenine Count

3281 bp

Thymine Count

3094 bp

Guanine Count

3830 bp

Cytosine Count

3876 bp

Genome Length

14081 bp

Protein-coding Genes

11 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

4

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
1_nc_021795: structural proteinN008_RS22840Not AvailableNegative26318 - 29890132299.0
Tail length tape measure proteinN008_RS00120Not AvailableNegative29974 - 33054107856.0
hypothetical proteinN008_RS22845Not AvailableNegative33071 - 3340013020.3
hypothetical proteinN008_RS00125Not AvailableNegative33427 - 3383415393.8
Major tail proteinN008_RS22115Not AvailableNegative33931 - 3435014888.3
hypothetical proteinN008_RS22850Not AvailableNegative34394 - 3481315471.8
Minor capsid proteinN008_RS22120Not AvailableNegative34817 - 3516712932.7
head-tail adaptor proteinN008_RS22125Not AvailableNegative35158 - 3544510576.9
Dna packaging/head-tail-connectorN008_RS22855Not AvailableNegative35474 - 3599219586.1
hypothetical proteinN008_RS22860Not AvailableNegative35997 - 362308564.2

Displaying genes 1 – 10 of 4316 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.