Flavobacterium limnosediminis JC2902

rodaerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Flavobacteriaceae

Genus

Flavobacterium

Description

Flavobacterium limnosediminis JC2902 is a Gram-negative bacterium characterized by its aerobic metabolism and rod-shaped morphology. This species is non-motile, despite the presence of flagella, which may suggest a role in surface adherence or biofilm formation rather than in motility. The strain has a single replicon, indicating a streamlined genetic organization that is typical for many bacteria within the Flavobacterium genus. The accession number for Flavobacterium limnosediminis JC2902 is AVGG00000000.1, which serves as a unique identifier in genomic databases. This designation allows for further exploration of its genomic features and potential applications in microbiological research. In terms of ecological relevance, Flavobacterium species are often found in aquatic environments and are known for their role in the degradation of organic matter. This particular strain may contribute to nutrient cycling in limnic ecosystems, where it could assist in the breakdown of complex organic substances. The aerobic nature of the bacterium suggests it thrives in oxygen-rich environments, which aligns with its potential ecological roles in freshwater habitats. Understanding its specific interactions within these ecosystems could provide insights into the microbial dynamics and health of aquatic environments.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusFlavobacterium
SpeciesFlavobacterium limnosediminis
StrainJC2902

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceYes
Number of membranesNot Available
Image of Flavobacterium limnosediminis JC2902
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Flavobacterium limnosediminis JC2902 FLJC2902T_56, whole genome

Gene Summary

Adenine Count

1083512 bp

Thymine Count

1047439 bp

Guanine Count

640093 bp

Cytosine Count

695500 bp

Genome Length

3466544 bp

Protein-coding Genes

3117 genes

Non-Coding Genes

51 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
outer membrane protein, rnd efflux system precursorFLJC2902T_29040Not AvailableNegative3104843 - 310615649667.2
hypothetical proteinFLJC2902T_29050Not AvailableNegative3106290 - 31064846716.3
hypothetical proteinFLJC2902T_29060Not AvailableNegative3106547 - 31067869153.96
sugar o-acetyltransferaseFLJC2902T_29070Not AvailableNegative3106948 - 310863364677.4
lysm domain-containing proteinFLJC2902T_29080Not AvailableNegative3108635 - 310999350233.9
putative transmembrane proteinFLJC2902T_29090Not AvailableNegative3110046 - 311149754358.5
args proteinFLJC2902T_29100Not AvailableNegative3111610 - 311338566955.5
putative tonb-dependent outer membrane receptorFLJC2902T_29110Not AvailablePositive3113690 - 311618293539.5
fatty acid hydroxylaseFLJC2902T_29120Not AvailableNegative3116263 - 311692826373.4
3-oxoacyl-[acyl-carrier-protein] synthase iiiFLJC2902T_29130Not AvailableNegative3117020 - 311803037170.1

Displaying genes 2831 – 2840 of 3168 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

1 record
Metabolite IDMetabolite nameStructureCAS number
BASm0014033AmmoniaH3NChemical structure of Ammonia7664-41-7
Average17.0305Da
Monoisotopic17.026549101Da

Displaying 1–1 of 1 metabolites

Health Effects

No health effects information available for this bacterium.