Ruminococcus flavefaciens 007c

Cocci

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Eubacteriales

Family

Oscillospiraceae

Genus

Ruminococcus

Description

Ruminococcus flavefaciens 007c is a Gram-positive bacterium characterized by its cocci shape. This species possesses flagella, which may contribute to its motility and ecological adaptability. Ruminococcus flavefaciens 007c has a single replicon, indicating a streamlined genetic structure that could reflect its specialized role in its ecological niche. The organism is cataloged under the accession number ATAX00000000.1, which provides a reference for further genomic studies and analysis. Its classification within the Ruminococcus genus suggests that it may play a significant role in the degradation of complex carbohydrates, particularly in the digestive systems of herbivores. Ruminococcus flavefaciens is known to be part of the microbial community in the rumen, where it contributes to the fermentation processes that enable the breakdown of plant materials. This function is essential for the nutritional ecology of ruminants, as it aids in the efficient utilization of fibrous plant matter. The presence of flagella may enhance its ability to navigate within the rumen environment, facilitating its interactions with other microbial species and the substrate available for fermentation. In summary, Ruminococcus flavefaciens 007c is a flagellated, Gram-positive cocci with a single replicon, highlighting its potential importance in the microbial ecology of ruminants and its role in carbohydrate fermentation processes.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderEubacteriales
FamilyOscillospiraceae
GenusRuminococcus
SpeciesRuminococcus flavefaciens
Strain007c

Profile

Physiology
Gram staining propertiesPositive
ShapeCocci
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Ruminococcus flavefaciens 007c
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Ruminococcus flavefaciens 007c


Gene Summary

Adenine Count

991551 bp

Thymine Count

998188 bp

Guanine Count

816584 bp

Cytosine Count

843435 bp

Genome Length

3649758 bp

Protein-coding Genes

3160 genes

Non-Coding Genes

82 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Site-specific recombinaseRF007C_02535Not AvailableNegative1353819 - 135529456998.2
Site-specific recombinaseRF007C_02540Not AvailableNegative1355276 - 135624436998.1
EndolysinRF007C_02545Not AvailableNegative1356398 - 135758543743.3
hypothetical proteinRF007C_02550Not AvailablePositive1357717 - 135830123292.5
hypothetical proteinRF007C_02555Not AvailablePositive1358362 - 135890119276.1
HolinRF007C_02560Not AvailableNegative1358943 - 135940416571.6
hypothetical proteinRF007C_02565Not AvailableNegative1359417 - 136008824972.5
Tail sheath proteinRF007C_02570Not AvailableNegative1360085 - 136144350294.4
Tail proteinRF007C_02575Not AvailableNegative1361443 - 136279250260.4
Endopeptidase tail proteinRF007C_02580Not AvailableNegative1362797 - 136390941949.1

Displaying genes 11 – 20 of 3242 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

261 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001035indole-3-pyruvateC11H8NO3Chemical structure of indole-3-pyruvate35656-49-6
Average202.1861Da
Monoisotopic202.0504181Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm0001360methanesulfonateCH3O3SChemical structure of methanesulfonate59721-29-8
Average95.09Da
Monoisotopic94.980838711Da
BASm0001639CobinamideC48H72CoN11O8Chemical structure of Cobinamide13497-85-3
Average990.0874Da
Monoisotopic989.4897335Da
BASm0001661Cu(2+)CuChemical structure of Cu(2+)7440-50-8
Average63.546Da
Monoisotopic62.929601079Da
BASm00022412-demethylmenaquinone-8C50H70O2Chemical structure of 2-demethylmenaquinone-8Not available
Average703.0896Da
Monoisotopic702.5375815Da

Displaying 1–10 of 261 metabolites

Health Effects

No health effects information available for this bacterium.