Ruminococcus flavefaciens 007c

Cocci

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Eubacteriales

Family

Oscillospiraceae

Genus

Ruminococcus

Description

Ruminococcus flavefaciens 007c is a Gram-positive bacterium characterized by its cocci shape. This species possesses flagella, which may contribute to its motility and ecological adaptability. Ruminococcus flavefaciens 007c has a single replicon, indicating a streamlined genetic structure that could reflect its specialized role in its ecological niche. The organism is cataloged under the accession number ATAX00000000.1, which provides a reference for further genomic studies and analysis. Its classification within the Ruminococcus genus suggests that it may play a significant role in the degradation of complex carbohydrates, particularly in the digestive systems of herbivores. Ruminococcus flavefaciens is known to be part of the microbial community in the rumen, where it contributes to the fermentation processes that enable the breakdown of plant materials. This function is essential for the nutritional ecology of ruminants, as it aids in the efficient utilization of fibrous plant matter. The presence of flagella may enhance its ability to navigate within the rumen environment, facilitating its interactions with other microbial species and the substrate available for fermentation. In summary, Ruminococcus flavefaciens 007c is a flagellated, Gram-positive cocci with a single replicon, highlighting its potential importance in the microbial ecology of ruminants and its role in carbohydrate fermentation processes.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderEubacteriales
FamilyOscillospiraceae
GenusRuminococcus
SpeciesRuminococcus flavefaciens
Strain007c

Profile

Physiology
Gram staining propertiesPositive
ShapeCocci
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Ruminococcus flavefaciens 007c
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Ruminococcus flavefaciens 007c Rf007c_contig00955, whole genome

Gene Summary

Adenine Count

991551 bp

Thymine Count

998188 bp

Guanine Count

816584 bp

Cytosine Count

843435 bp

Genome Length

3649758 bp

Protein-coding Genes

3160 genes

Non-Coding Genes

82 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
30s ribosomal protein s9RF007C_09585Not AvailableNegative2289827 - 229022814936.2
50s ribosomal protein l13RF007C_09590Not AvailableNegative2290246 - 229067415909.4
hypothetical proteinRF007C_09595Not AvailablePositive2291245 - 229327575069.6
prolyl-trna synthetaseRF007C_09600Not AvailablePositive2293499 - 229494454247.7
rnaseh ribonucleaseRF007C_09605Not AvailablePositive2295235 - 229568416528.8
cysteine desulfuraseRF007C_09610Not AvailablePositive2295697 - 229688743453.3
hypothetical proteinRF007C_09615Not AvailablePositive2296909 - 229731614885.6
fes cluster assembly scaffold iscuRF007C_09620Not AvailablePositive2297348 - 229776414850.8
hypothetical proteinRF007C_09625Not AvailableNegative2301816 - 230285339029.1
hypothetical proteinRF007C_09630Not AvailableNegative2302883 - 230482672821.0

Displaying genes 1981 – 1990 of 3242 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

261 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001035indole-3-pyruvateC11H8NO3Chemical structure of indole-3-pyruvate35656-49-6
Average202.1861Da
Monoisotopic202.0504181Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm0001360methanesulfonateCH3O3SChemical structure of methanesulfonate59721-29-8
Average95.09Da
Monoisotopic94.980838711Da
BASm0001639CobinamideC48H72CoN11O8Chemical structure of Cobinamide13497-85-3
Average990.0874Da
Monoisotopic989.4897335Da
BASm0001661Cu(2+)CuChemical structure of Cu(2+)7440-50-8
Average63.546Da
Monoisotopic62.929601079Da
BASm00022412-demethylmenaquinone-8C50H70O2Chemical structure of 2-demethylmenaquinone-8Not available
Average703.0896Da
Monoisotopic702.5375815Da

Displaying 1–10 of 261 metabolites

Health Effects

No health effects information available for this bacterium.