Polaribacter atrinae str. KACC 17473

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Flavobacteriaceae

Genus

Polaribacter

Description

Polaribacter atrinae str. KACC 17473 is a Gram-negative bacterium characterized by its rod shape. This organism is notable for having a single replicon, which typically indicates a streamlined genomic structure that may enhance its adaptability to specific environments. The genomic information for Polaribacter atrinae str. KACC 17473 is accessible under the accession number LVWE00000000.1. As a member of the Polaribacter genus, this strain likely plays a role in marine ecosystems, contributing to the degradation of organic material and the cycling of nutrients. Such bacteria are often found in polar and cold aquatic environments, where they are adapted to thrive under low-temperature conditions. The ecological insights provided by the characteristics of Polaribacter atrinae str. KACC 17473 suggest that it may be involved in biogeochemical processes, particularly in nutrient cycling in marine habitats. Understanding its traits can help elucidate the functional roles of similar organisms in their natural ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusPolaribacter
SpeciesPolaribacter atrinae
StrainKACC 17473

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Polaribacter atrinae str. KACC 17473
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Polaribacter atrinae str. KACC 17473


Gene Summary

Adenine Count

1375629 bp

Thymine Count

1369187 bp

Guanine Count

597458 bp

Cytosine Count

600428 bp

Genome Length

3942702 bp

Protein-coding Genes

3260 genes

Non-Coding Genes

50 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
16s ribosomal rnaNot AvailableNot AvailablePositive112 - 1635Not Available
5s ribosomal rnaNot AvailableNot AvailablePositive129 - 238Not Available
23s ribosomal rnaNot AvailableNot AvailablePositive138 - 3025Not Available
hypothetical proteinLPB303_00005Not AvailableNegative76 - 72625663.3
hypothetical proteinLPB303_00010Not AvailableNegative727 - 235262677.4
Trna-metNot AvailableNot AvailablePositive2401 - 2476Not Available
gtpase eraLPB303_00020B3ETC6Positive2657 - 354134008.3
5s ribosomal rnaNot AvailableNot AvailablePositive3133 - 3242Not Available
hypothetical proteinLPB303_00025Not AvailableNegative3634 - 414319574.0
ribosome biogenesis gtpase derLPB303_00030A5FIR0Positive4308 - 561849635.7

Displaying genes 1 – 10 of 3310 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

182 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000047sophoroseC12H22O11Chemical structure of sophoroseNot available
Average342.297Da
Monoisotopic342.116211528Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm0000430hercynineC9H15N3O2Chemical structure of hercynineNot available
Average197.238Da
Monoisotopic197.1164267Da
BASm0000719chloramphenicol 3-acetateC13H14Cl2N2O6Chemical structure of chloramphenicol 3-acetateNot available
Average365.16Da
Monoisotopic364.0228916Da

Displaying 1–10 of 182 metabolites

Health Effects

No health effects information available for this bacterium.