Rathayibacter rathayi NCPPB 2980 = VKM Ac-1601

Rod

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Micrococcales

Family

Microbacteriaceae

Genus

Rathayibacter

Description

Rathayibacter rathayi NCPPB 2980, also known as VKM Ac-1601, is a Gram-positive bacterium characterized by its rod shape. This species has been documented with a single replicon, indicating a relatively simple genomic organization. The strain is cataloged under the accession number OCNL00000000.1. The classification as Gram-positive suggests the presence of a thick peptidoglycan layer in its cell wall, a characteristic that is often associated with certain physiological properties such as resistance to environmental stresses and the ability to form spores in some related species. The rod shape of Rathayibacter rathayi is typical of many bacteria and may influence its motility and interaction with its environment. In terms of ecological significance, members of the genus Rathayibacter are known to be plant-associated bacteria, often involved in the pathogenic interactions with host plants. This association highlights the potential impact of Rathayibacter rathayi on agricultural systems, as it may play a role in plant disease dynamics. Understanding its biological traits is crucial for developing effective management strategies in crops that may be affected by this bacterium. Further research into its specific interactions with host plants could reveal more about its ecological role and potential implications for pest management and agricultural health.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyMicrobacteriaceae
GenusRathayibacter
SpeciesRathayibacter rathayi
StrainNCPPB 2980 = VKM Ac-1601

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rathayibacter rathayi strain VKM Ac-1601 genome assembly, contig:

Gene Summary

Adenine Count

492128 bp

Thymine Count

497439 bp

Guanine Count

1119139 bp

Cytosine Count

1113621 bp

Genome Length

3222676 bp

Protein-coding Genes

3126 genes

Non-Coding Genes

49 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
sugar phosphate permeaseSAMN06295924_101331Not AvailablePositive339090 - 34037945200.6
predicted kinaseSAMN06295924_101332Not AvailablePositive340369 - 34101323978.4
putative glutathione s-transferaseSAMN06295924_101333Not AvailableNegative341090 - 34210637896.4
lsu ribosomal protein l25pSAMN06295924_101334Not AvailablePositive342381 - 34298921396.4
peptidyl-trna hydrolaseSAMN06295924_101335Not AvailablePositive343082 - 34366620612.8
transcription-repair coupling factorSAMN06295924_101336Not AvailablePositive343819 - 347430131047.0
succinate dehydrogenase subunit bSAMN06295924_101337Not AvailableNegative348078 - 34883928282.7
succinate dehydrogenase subunit aSAMN06295924_101338Not AvailableNegative348842 - 35067766668.0
succinate dehydrogenase subunit dSAMN06295924_101339Not AvailableNegative350781 - 35122415947.7
succinate dehydrogenase subunit cSAMN06295924_101340Not AvailableNegative351221 - 35165516020.9

Displaying genes 331 – 340 of 3175 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.