Rathayibacter rathayi NCPPB 2980 = VKM Ac-1601

Rod

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Micrococcales

Family

Microbacteriaceae

Genus

Rathayibacter

Description

Rathayibacter rathayi NCPPB 2980, also known as VKM Ac-1601, is a Gram-positive bacterium characterized by its rod shape. This species has been documented with a single replicon, indicating a relatively simple genomic organization. The strain is cataloged under the accession number OCNL00000000.1. The classification as Gram-positive suggests the presence of a thick peptidoglycan layer in its cell wall, a characteristic that is often associated with certain physiological properties such as resistance to environmental stresses and the ability to form spores in some related species. The rod shape of Rathayibacter rathayi is typical of many bacteria and may influence its motility and interaction with its environment. In terms of ecological significance, members of the genus Rathayibacter are known to be plant-associated bacteria, often involved in the pathogenic interactions with host plants. This association highlights the potential impact of Rathayibacter rathayi on agricultural systems, as it may play a role in plant disease dynamics. Understanding its biological traits is crucial for developing effective management strategies in crops that may be affected by this bacterium. Further research into its specific interactions with host plants could reveal more about its ecological role and potential implications for pest management and agricultural health.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyMicrobacteriaceae
GenusRathayibacter
SpeciesRathayibacter rathayi
StrainNCPPB 2980 = VKM Ac-1601

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rathayibacter rathayi strain VKM Ac-1601 genome assembly, contig:

Gene Summary

Adenine Count

492128 bp

Thymine Count

497439 bp

Guanine Count

1119139 bp

Cytosine Count

1113621 bp

Genome Length

3222676 bp

Protein-coding Genes

3126 genes

Non-Coding Genes

49 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
capsular exopolysaccharide familySAMN06295924_101249Not AvailablePositive251512 - 25297851262.7
protein-tyrosine phosphataseSAMN06295924_101250Not AvailablePositive252989 - 25366023828.5
udpglucose 6-dehydrogenaseSAMN06295924_101251Not AvailablePositive253759 - 25506345249.8
vanz like family proteinSAMN06295924_101252Not AvailableNegative255089 - 25560418603.0
Trna-proNot AvailableNot AvailablePositive255821 - 255897Not Available
predicted phosphohydrolase, mpp superfamilySAMN06295924_101254Not AvailableNegative255975 - 25692833637.1
hypothetical proteinSAMN06295924_101255Not AvailablePositive257552 - 2577226126.4
enamine deaminase rida, house cleaning of reactive enamine intermediates, yjgf/yer057c/uk114 familySAMN06295924_101256Not AvailablePositive257719 - 25817415054.2
acetyl-coenzyme a synthetaseSAMN06295924_101257Not AvailableNegative258262 - 26025671780.1
pilus assembly protein cpafSAMN06295924_101259Not AvailablePositive260703 - 26174936313.8

Displaying genes 251 – 260 of 3175 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.