Rathayibacter rathayi NCPPB 2980 = VKM Ac-1601

Rod

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Micrococcales

Family

Microbacteriaceae

Genus

Rathayibacter

Description

Rathayibacter rathayi NCPPB 2980, also known as VKM Ac-1601, is a Gram-positive bacterium characterized by its rod shape. This species has been documented with a single replicon, indicating a relatively simple genomic organization. The strain is cataloged under the accession number OCNL00000000.1. The classification as Gram-positive suggests the presence of a thick peptidoglycan layer in its cell wall, a characteristic that is often associated with certain physiological properties such as resistance to environmental stresses and the ability to form spores in some related species. The rod shape of Rathayibacter rathayi is typical of many bacteria and may influence its motility and interaction with its environment. In terms of ecological significance, members of the genus Rathayibacter are known to be plant-associated bacteria, often involved in the pathogenic interactions with host plants. This association highlights the potential impact of Rathayibacter rathayi on agricultural systems, as it may play a role in plant disease dynamics. Understanding its biological traits is crucial for developing effective management strategies in crops that may be affected by this bacterium. Further research into its specific interactions with host plants could reveal more about its ecological role and potential implications for pest management and agricultural health.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyMicrobacteriaceae
GenusRathayibacter
SpeciesRathayibacter rathayi
StrainNCPPB 2980 = VKM Ac-1601

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rathayibacter rathayi strain VKM Ac-1601 genome assembly, contig:

Gene Summary

Adenine Count

492128 bp

Thymine Count

497439 bp

Guanine Count

1119139 bp

Cytosine Count

1113621 bp

Genome Length

3222676 bp

Protein-coding Genes

3126 genes

Non-Coding Genes

49 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinSAMN06295924_109138Not AvailablePositive2578187 - 257854912157.0
epoxide hydrolase n terminusSAMN06295924_109139Not AvailablePositive2578594 - 257982345964.1
hypothetical proteinSAMN06295924_109140Not AvailablePositive2580079 - 25803248332.27
type vii secretion protein esaa, n-terminal domain-containing proteinSAMN06295924_1101Not AvailableNegative2581127 - 258300766996.7
formyltetrahydrofolate-dependent phosphoribosylglycinamide formyltransferaseSAMN06295924_1102Not AvailablePositive2583468 - 258406120815.1
imp cyclohydrolase /phosphoribosylaminoimidazolecarboxamide formyltransferaseSAMN06295924_1103Not AvailablePositive2584058 - 258565955531.9
dimethylargininaseSAMN06295924_1104Not AvailablePositive2585936 - 258721044454.5
atp-binding cassette, subfamily bSAMN06295924_1105Not AvailablePositive2587299 - 258924870259.0
atp-binding cassette, subfamily bSAMN06295924_1106Not AvailablePositive2589245 - 259104764788.9
alkylated dna nucleotide flippase atl1, participates in nucleotide excision repair, ada-like dna-binding domainSAMN06295924_1107Not AvailableNegative2591319 - 25915558571.14

Displaying genes 2501 – 2510 of 3175 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.