Rathayibacter rathayi NCPPB 2980 = VKM Ac-1601

Rod

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Micrococcales

Family

Microbacteriaceae

Genus

Rathayibacter

Description

Rathayibacter rathayi NCPPB 2980, also known as VKM Ac-1601, is a Gram-positive bacterium characterized by its rod shape. This species has been documented with a single replicon, indicating a relatively simple genomic organization. The strain is cataloged under the accession number OCNL00000000.1. The classification as Gram-positive suggests the presence of a thick peptidoglycan layer in its cell wall, a characteristic that is often associated with certain physiological properties such as resistance to environmental stresses and the ability to form spores in some related species. The rod shape of Rathayibacter rathayi is typical of many bacteria and may influence its motility and interaction with its environment. In terms of ecological significance, members of the genus Rathayibacter are known to be plant-associated bacteria, often involved in the pathogenic interactions with host plants. This association highlights the potential impact of Rathayibacter rathayi on agricultural systems, as it may play a role in plant disease dynamics. Understanding its biological traits is crucial for developing effective management strategies in crops that may be affected by this bacterium. Further research into its specific interactions with host plants could reveal more about its ecological role and potential implications for pest management and agricultural health.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyMicrobacteriaceae
GenusRathayibacter
SpeciesRathayibacter rathayi
StrainNCPPB 2980 = VKM Ac-1601

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rathayibacter rathayi strain VKM Ac-1601 genome assembly, contig:

Gene Summary

Adenine Count

492128 bp

Thymine Count

497439 bp

Guanine Count

1119139 bp

Cytosine Count

1113621 bp

Genome Length

3222676 bp

Protein-coding Genes

3126 genes

Non-Coding Genes

49 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Trna-aspNot AvailableNot AvailablePositive2494858 - 2494934Not Available
Trna-gluNot AvailableNot AvailablePositive2495060 - 2495132Not Available
murein dd-endopeptidase mepm and murein hydrolase activator nlpd, contain lysm domainSAMN06295924_10949Not AvailablePositive2495381 - 249674846664.9
cell wall-associated hydrolase, nlpc familySAMN06295924_10950Not AvailablePositive2496741 - 249825251774.3
inorganic pyrophosphataseSAMN06295924_10951Not AvailableNegative2498324 - 249881518281.5
trna(ile)-lysidine synthaseSAMN06295924_10952Not AvailablePositive2498841 - 249993237311.4
hypoxanthine phosphoribosyltransferaseSAMN06295924_10953Not AvailablePositive2500056 - 250060720132.4
predicted alpha-1,6-mannanase, gh76 familySAMN06295924_10954Not AvailablePositive2500573 - 250163738983.2
diacylglycerol kinase family enzymeSAMN06295924_10955Not AvailablePositive2501642 - 250263434543.4
dna-binding transcriptional regulator, acrr familySAMN06295924_10956Not AvailablePositive2502710 - 250331221268.5

Displaying genes 2411 – 2420 of 3175 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.