Flavobacterium commune str. PK15

Rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Flavobacteriaceae

Genus

Flavobacterium

Description

Flavobacterium commune str. PK15 is a rod-shaped bacterium that features the presence of flagella, which suggests it is motile. With a single replicon, this strain has a streamlined genetic organization, potentially facilitating efficient replication and adaptation to its environment. The strain is cataloged under the accession number NZ_CP017774.1, which provides a reference for its genomic data and serves as a basis for further studies. Flavobacterium species are generally known for their ecological roles in the decomposition of organic matter, particularly in aquatic environments. The motility conferred by flagella may enhance the bacterium’s ability to colonize diverse habitats and access nutrients, contributing to its ecological success. This mobility can be particularly advantageous in environments where nutrient availability fluctuates or in biofilm formation on surfaces. The presence of a single replicon might also indicate a relatively stable genome, which can be beneficial for maintaining essential functions in fluctuating environments. Overall, Flavobacterium commune str. PK15 exemplifies traits that may facilitate its survival and ecological role, particularly in nutrient cycling and decomposition processes within its habitat. Further research could elucidate its specific interactions within microbial communities and its contributions to ecosystem dynamics.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusFlavobacterium
SpeciesFlavobacterium commune
StrainPK15

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Flavobacterium commune str. PK15
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Flavobacterium commune strain PK15 chromosome, complete genome.

Gene Summary

Adenine Count

1264999 bp

Thymine Count

1262302 bp

Guanine Count

667716 bp

Cytosine Count

656197 bp

Genome Length

3851214 bp

Protein-coding Genes

3153 genes

Non-Coding Genes

75 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ragb/susd family nutrient uptake outer membrane proteinBIW12_RS13220Not AvailablePositive3173237 - 317501566053.6
ipt/tig domain-containing proteinBIW12_RS13225Not AvailablePositive3175042 - 317621141704.9
alginate lyase family proteinBIW12_RS13230Not AvailablePositive3176296 - 317756446534.2
pectinesterase family proteinBIW12_RS13235Not AvailablePositive3178482 - 317944735988.7
glycoside hydrolase family 28 proteinBIW12_RS13240Not AvailablePositive3179509 - 318107457632.0
alpha/beta hydrolaseBIW12_RS13245Not AvailablePositive3181088 - 318200533262.1
susc/raga family tonb-linked outer membrane proteinBIW12_RS13250Not AvailablePositive3182675 - 3186025123162.0
ragb/susd family nutrient uptake outer membrane proteinBIW12_RS13255Not AvailablePositive3186037 - 318805875807.8
hypothetical proteinBIW12_RS13260Not AvailablePositive3188078 - 318967057968.0
pectinesterase family proteinBIW12_RS13265Not AvailablePositive3189802 - 319084838818.1

Displaying genes 2651 – 2660 of 3228 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.