Flavobacterium commune str. PK15

Rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Flavobacteriaceae

Genus

Flavobacterium

Description

Flavobacterium commune str. PK15 is a rod-shaped bacterium that features the presence of flagella, which suggests it is motile. With a single replicon, this strain has a streamlined genetic organization, potentially facilitating efficient replication and adaptation to its environment. The strain is cataloged under the accession number NZ_CP017774.1, which provides a reference for its genomic data and serves as a basis for further studies. Flavobacterium species are generally known for their ecological roles in the decomposition of organic matter, particularly in aquatic environments. The motility conferred by flagella may enhance the bacterium’s ability to colonize diverse habitats and access nutrients, contributing to its ecological success. This mobility can be particularly advantageous in environments where nutrient availability fluctuates or in biofilm formation on surfaces. The presence of a single replicon might also indicate a relatively stable genome, which can be beneficial for maintaining essential functions in fluctuating environments. Overall, Flavobacterium commune str. PK15 exemplifies traits that may facilitate its survival and ecological role, particularly in nutrient cycling and decomposition processes within its habitat. Further research could elucidate its specific interactions within microbial communities and its contributions to ecosystem dynamics.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusFlavobacterium
SpeciesFlavobacterium commune
StrainPK15

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Flavobacterium commune str. PK15
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Flavobacterium commune strain PK15 chromosome, complete genome.

Gene Summary

Adenine Count

1264999 bp

Thymine Count

1262302 bp

Guanine Count

667716 bp

Cytosine Count

656197 bp

Genome Length

3851214 bp

Protein-coding Genes

3153 genes

Non-Coding Genes

75 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
sigma-54-dependent transcriptional regulatorBIW12_RS07655Not AvailablePositive1838455 - 183978949528.2
hybrid sensor histidine kinase/response regulatorBIW12_RS07660Not AvailableNegative1839786 - 184222192074.9
s9 family peptidaseBIW12_RS07665Not AvailableNegative1842244 - 184409771311.9
monofunctional biosynthetic peptidoglycan transglycosylaseBIW12_RS07670Not AvailablePositive1844314 - 184505728219.6
lipid a deacylase lpxr family proteinBIW12_RS07675Not AvailablePositive1845058 - 184600837019.1
duf6377 domain-containing proteinBIW12_RS07680Not AvailablePositive1846119 - 184776564141.5
glycoside hydrolase family 97 proteinBIW12_RS07685Not AvailablePositive1848011 - 185012580061.6
giy-yig nuclease family proteinBIW12_RS07690Not AvailableNegative1850245 - 185049910174.2
Trna-alaNot AvailableNot AvailablePositive1850544 - 1850620Not Available
enoyl-coa hydratase/isomerase family proteinBIW12_RS07700Not AvailablePositive1850722 - 185149227622.2

Displaying genes 1531 – 1540 of 3228 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.