Lysobacter dokdonensis DS-58

rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Lysobacterales

Family

Lysobacteraceae

Genus

Noviluteimonas

Description

Lysobacter dokdonensis DS-58 is a Gram-negative, rod-shaped bacterium characterized by its aerobic respiration and non-spore-forming nature. This microbe exhibits optimal growth at a temperature of 29.0 °C, suggesting a mesophilic lifestyle that may be suited to a variety of environments. The Gram-negative cell wall structure typically indicates a complex outer membrane, which may play a role in its interactions with surrounding microbial communities and potential substrates. As a member of the Lysobacter genus, L. dokdonensis DS-58 may contribute to the degradation of organic matter, although specific metabolic pathways and substrates utilized by this strain require further investigation. Its aerobic nature implies that it relies on oxygen for growth, which may influence its ecological niche within environments with adequate oxygen availability. The unique combination of traits exhibited by Lysobacter dokdonensis DS-58 positions it as an organism potentially involved in nutrient cycling processes, contributing to the breakdown of organic compounds in aerobic environments. Understanding the ecological roles and metabolic capabilities of this bacterium could provide insights into its applications in bioremediation or soil health maintenance, particularly in ecosystems where organic matter turnover is critical.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderLysobacterales
FamilyLysobacteraceae
GenusNoviluteimonas
SpeciesNoviluteimonas dokdonensis
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature29
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Lysobacter dokdonensis DS-58

Accession NumberJRKJ00000000.1

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

3115 genes

Non-Coding Genes

97 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
AttlNot AvailableNot Available+1064503 - 1064541Not Available
IntegraseLF41_2373Not Available-1064550 - 106553636707.0
hypothetical proteinLF41_2374Not Available-1065756 - 10658905058.02
hypothetical proteinLF41_2375Not Available-1066211 - 106677719479.0
hypothetical proteinLF41_2376Not Available-1066804 - 106708510217.0
hypothetical proteinLF41_2377Not Available-1067109 - 10673127739.01
hypothetical proteinLF41_2378Not Available-1067340 - 106762711105.0
Essential recombination function proteinLF41_2379Not Available-1067628 - 106827823515.6
hypothetical proteinLF41_2380Not Available-1068281 - 10684606724.77
hypothetical proteinLF41_2381Not Available-1068457 - 10685885080.3

Displaying genes 1 – 10 of 3212 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

66 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm00006985-dehydro-2-deoxy-D-gluconateC6H9O6Chemical structure of 5-dehydro-2-deoxy-D-gluconateNot available
Average177.133Da
Monoisotopic177.04046159Da
BASm0001086scyllo-inososeC6H10O6Chemical structure of scyllo-inososeNot available
Average178.14Da
Monoisotopic178.0477381Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm0001358lactateC3H5O3Chemical structure of lactateNot available
Average89.071Da
Monoisotopic89.0244176Da
BASm0001492(2Z,4E)-2-hydroxyhexa-2,4-dienedioateC6H4O5Chemical structure of (2Z,4E)-2-hydroxyhexa-2,4-dienedioateNot available
Average156.094Da
Monoisotopic156.006970389Da

Displaying 1–10 of 66 metabolites