Lysobacter dokdonensis DS-58

rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Lysobacterales

Family

Lysobacteraceae

Genus

Noviluteimonas

Description

Lysobacter dokdonensis DS-58 is a Gram-negative, non-motile, rod-shaped bacterium that thrives in aerobic conditions. It is categorized as mesophilic, with an optimal growth temperature of 29°C, indicating its preference for moderate temperatures. Notably, this species has a single replicon and does not engage in sporulation. The characteristics of Lysobacter dokdonensis DS-58 suggest that it may play a significant role in its ecological niche, particularly in environments where aerobic conditions prevail. Its non-spore-forming nature implies that it relies on moisture and stable environmental conditions for survival and growth, as it does not have the capability to endure extreme stressors typically associated with spore formation. The complete genome of Lysobacter dokdonensis DS-58 is accessible under the accession number JRKJ00000000.1, which could provide insights into its metabolic pathways and ecological functions. Understanding the traits of this bacterium can lead to further exploration of its potential applications in biotechnology, such as in biocontrol or bioremediation, where aerobic bacteria are often essential for the breakdown of organic matter or pollutants in the environment. Overall, Lysobacter dokdonensis DS-58 exemplifies the diversity of microbial life and its adaptations to specific ecological contexts.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderLysobacterales
FamilyLysobacteraceae
GenusNoviluteimonas
SpeciesNoviluteimonas dokdonensis
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature29
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Lysobacter dokdonensis DS-58 contig25, whole genome shotgun

Gene Summary

Adenine Count

534194 bp

Thymine Count

538347 bp

Guanine Count

1100317 bp

Cytosine Count

1101548 bp

Genome Length

3274406 bp

Protein-coding Genes

3115 genes

Non-Coding Genes

97 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ribonucleotide reductase transcriptional regulator nrdrLF41_67Not AvailablePositive74337 - 7485520038.0
signal peptide proteinLF41_68Not AvailablePositive74852 - 7526515100.8
riboflavin biosynthesis protein ribdLF41_69Not AvailablePositive75262 - 7638039653.9
sam-dependent methyltransferaseLF41_70Not AvailablePositive76377 - 7714728576.6
riboflavin synthase, alpha subunitLF41_71Not AvailablePositive77132 - 7774621808.0
single-stranded-dna-specific exonuclease recjLF41_746Not AvailableNegative80386 - 8210160211.9
regulatory protein rpfe typeLF41_747Not AvailableNegative82098 - 8303934345.9
transcription elongation factor greaLF41_748Not AvailableNegative83044 - 8350816628.7
carbamoyl-phosphate synthase large chainLF41_749Not AvailableNegative83523 - 86771117816.0
hypothetical proteinLF41_750Not AvailableNegative86778 - 8735320766.0

Displaying genes 161 – 170 of 3212 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

66 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm00006985-dehydro-2-deoxy-D-gluconateC6H9O6Chemical structure of 5-dehydro-2-deoxy-D-gluconateNot available
Average177.133Da
Monoisotopic177.04046159Da
BASm0001086scyllo-inososeC6H10O6Chemical structure of scyllo-inososeNot available
Average178.14Da
Monoisotopic178.0477381Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm0001358lactateC3H5O3Chemical structure of lactateNot available
Average89.071Da
Monoisotopic89.0244176Da
BASm0001492(2Z,4E)-2-hydroxyhexa-2,4-dienedioateC6H4O5Chemical structure of (2Z,4E)-2-hydroxyhexa-2,4-dienedioateNot available
Average156.094Da
Monoisotopic156.006970389Da

Displaying 1–10 of 66 metabolites

Health Effects

No health effects information available for this bacterium.