Pedobacter jejuensis str. TNB23

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Pedobacter

Description

Pedobacter jejuensis strain TNB23 is a bacterium characterized by the presence of flagella, which suggests it has the capability for motility. This trait may assist the organism in navigating its environment, potentially facilitating nutrient acquisition or evasion from unfavorable conditions. The strain has a single replicon, indicating a streamlined genetic organization that can be advantageous for cellular efficiency and replication. The genome of Pedobacter jejuensis TNB23 is accessible under the accession number RBEE00000000.1, which allows for further exploration of its genetic makeup and functional capabilities. This genomic information is crucial for understanding the metabolic pathways and ecological roles of this strain in its natural habitat. Biologically, the presence of flagella in Pedobacter jejuensis TNB23 may play a significant role in its ecological interactions. In microbial communities, motility can enhance the organism's ability to colonize various niches, interact with other microorganisms, and contribute to biogeochemical cycles. This capability can be particularly important in diverse environments, such as soil or aquatic systems, where movement may be essential for survival and ecological success. Overall, the traits of Pedobacter jejuensis TNB23 highlight its potential adaptability and ecological significance in microbial ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusPedobacter
SpeciesPedobacter jejuensis
StrainTNB23

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedobacter jejuensis strain TNB23 contig045, whole genome shotgun

Gene Summary

Adenine Count

1545139 bp

Thymine Count

1535008 bp

Guanine Count

847953 bp

Cytosine Count

868280 bp

Genome Length

4799680 bp

Protein-coding Genes

3970 genes

Non-Coding Genes

55 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
m20/m25/m40 family metallo-hydrolaseD7004_07185Not AvailableNegative1763960 - 176550756800.6
acetyl-coa carboxylase carboxyltransferase subunit betaD7004_07190Not AvailableNegative1766571 - 176741631257.1
class ii fructose-bisphosphate aldolaseD7004_07195Not AvailablePositive1767842 - 176892139788.2
low affinity iron permease family proteinD7004_07200Not AvailablePositive1769064 - 176954617987.8
gnat family n-acetyltransferaseD7004_07205Not AvailablePositive1769546 - 176996815969.9
alpha/beta hydrolaseD7004_07210Not AvailableNegative1770003 - 177095334978.4
hydroxymethylglutaryl-coa lyaseD7004_07215Not AvailableNegative1771143 - 177200931603.9
nad(p)/fad-dependent oxidoreductaseD7004_07220Not AvailableNegative1772226 - 177354248805.5
protein translocase subunit secdfD7004_07225Not AvailableNegative1773955 - 1776945108065.0
dihydrofolate reductaseD7004_07230Not AvailableNegative1777578 - 177808119037.6

Displaying genes 1421 – 1430 of 4025 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.