Pedobacter jejuensis str. TNB23

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Pedobacter

Description

Pedobacter jejuensis strain TNB23 is a bacterium characterized by the presence of flagella, which suggests it has the capability for motility. This trait may assist the organism in navigating its environment, potentially facilitating nutrient acquisition or evasion from unfavorable conditions. The strain has a single replicon, indicating a streamlined genetic organization that can be advantageous for cellular efficiency and replication. The genome of Pedobacter jejuensis TNB23 is accessible under the accession number RBEE00000000.1, which allows for further exploration of its genetic makeup and functional capabilities. This genomic information is crucial for understanding the metabolic pathways and ecological roles of this strain in its natural habitat. Biologically, the presence of flagella in Pedobacter jejuensis TNB23 may play a significant role in its ecological interactions. In microbial communities, motility can enhance the organism's ability to colonize various niches, interact with other microorganisms, and contribute to biogeochemical cycles. This capability can be particularly important in diverse environments, such as soil or aquatic systems, where movement may be essential for survival and ecological success. Overall, the traits of Pedobacter jejuensis TNB23 highlight its potential adaptability and ecological significance in microbial ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusPedobacter
SpeciesPedobacter jejuensis
StrainTNB23

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedobacter jejuensis strain TNB23 contig045, whole genome shotgun

Gene Summary

Adenine Count

1545139 bp

Thymine Count

1535008 bp

Guanine Count

847953 bp

Cytosine Count

868280 bp

Genome Length

4799680 bp

Protein-coding Genes

3970 genes

Non-Coding Genes

55 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
glycosyltransferaseD7004_06570Not AvailablePositive1624951 - 162567627973.6
30s ribosomal protein s1D7004_06575Not AvailableNegative1625739 - 162767371480.0
sh3 domain-containing proteinD7004_06580Not AvailableNegative1628059 - 162877826869.0
tpm domain-containing proteinD7004_06585Not AvailableNegative1628916 - 163041856306.2
duf1080 domain-containing proteinD7004_06590Not AvailableNegative1630478 - 163131131161.4
(d)cmp kinaseD7004_06595Not AvailableNegative1631366 - 163204625580.6
hypothetical proteinD7004_06600Not AvailableNegative1632108 - 163276725739.8
aminoacyl-trna hydrolaseD7004_06605Not AvailablePositive1633041 - 163345115630.2
lipid a deacylase lpxr family proteinD7004_06610Not AvailableNegative1633448 - 163439535358.6
endopeptidase laD7004_06615Not AvailableNegative1634488 - 163695992391.3

Displaying genes 1301 – 1310 of 4025 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.